Effective results for Truepera radiovictrix DSM 17093 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 35 proteins (4 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
649638.Trad_0896(PF01344) (PF13964)ER
649638.Trad_0980(PF01344) (PF13964)ER; (ER)
649638.Trad_2164(PF06695)ER
649638.Trad_2371(PF06695)ER
649638.Trad_2908PF01036ER
649638.Trad_2253(PF14397)mitochondrial; (mitochondrial)
649638.Trad_0104(PF14397)(mitochondrial)
649638.Trad_1251(PF01344)ER
649638.Trad_1760(PF01186)(ER)
649638.Trad_0497(PF01344)ER
649638.Trad_0171PF01036(ER)
649638.Trad_1798(PF12724)(mitochondrial)
649638.Trad_0374PF10343(mitochondrial)
649638.Trad_2924(PF00685)(mitochondrial)
649638.Trad_2944PF01036
649638.Trad_0613(PF14397)
649638.Trad_1480(PF12724)
649638.Trad_2021(PF01991)
649638.Trad_0668(PF00685)
649638.Trad_2362(PF14397)
649638.Trad_1218(PF09949)
649638.Trad_1219(PF09949)
649638.Trad_2930(PF04930)
649638.Trad_1785(PF12724)
649638.Trad_1780(PF12724)
649638.Trad_1250(PF00685)
649638.Trad_2445(PF14328)
649638.Trad_1082(PF00025)
649638.Trad_1634(PF12724)
649638.Trad_2723(PF00685)
649638.Trad_2724(PF00685)
649638.Trad_2221(PF05704)
649638.Trad_2711(PF13020)
649638.Trad_1198(PF13020)
649638.Trad_2177(PF10013)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================