Metamenu

Effective results for Clostridium lentocellum DSM 5427 (eggnog40)

Summary

Number of putative secreted proteins: 167
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 45 eukaryotic-like domains, contained in 167 proteins (8 high, 159 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
642492.Clole_0485(PF00759)ER
642492.Clole_3357PF03442ER
642492.Clole_0109(PF16760)ER
642492.Clole_0854(PF00543)ER
642492.Clole_0675(PF00759)ER
642492.Clole_0292(PF01554)(ER)
642492.Clole_0453(PF00543)mitochondrial
642492.Clole_3481(PF08367)ER
642492.Clole_0434(PF00543)(mitochondrial)
642492.Clole_2779(PF00145)(ER)
642492.Clole_0664(PF06100)ER
642492.Clole_2943(PF03714)ER
642492.Clole_2498(PF01554)(ER)
642492.Clole_0633(PF01554)ER
642492.Clole_0709(PF00759)ER
642492.Clole_1599(PF06541)ER
642492.Clole_3660PF03442mitochondrial
642492.Clole_1361(PF00137)ER
642492.Clole_1582(PF06541)ER
642492.Clole_3457(PF09587)ER
642492.Clole_1968PF03442ER
642492.Clole_2737(PF06541)ER
642492.Clole_2599PF03442ER
642492.Clole_3874(PF01554)(ER)
642492.Clole_3873(PF11070)ER
642492.Clole_1656(PF01554)(ER)
642492.Clole_3894(PF01554)(ER)
642492.Clole_1331(PF09587)ER; (ER)
642492.Clole_0683(PF00759)ER
642492.Clole_1801(PF03714)ER
642492.Clole_0038(PF00759)ER
642492.Clole_3127(PF01554)ER
642492.Clole_0805(PF00145)(ER)
642492.Clole_3110(PF06541)ER
642492.Clole_0878(PF13551) (PF13592)
642492.Clole_1692(PF03477) (PF13597)
642492.Clole_3747(PF06013)(plastid)
642492.Clole_3179(PF01554)(ER)
642492.Clole_3907(PF13551) (PF13592)
642492.Clole_2364(PF13551) (PF13592)
642492.Clole_0454(PF00543)(mitochondrial)
642492.Clole_1982PF00609(mitochondrial)
642492.Clole_0955(PF00145)(ER)
642492.Clole_3730(PF06013)(plastid)
642492.Clole_3739(PF06013)plastid
642492.Clole_4253(PF13551) (PF13592)
642492.Clole_2576(PF17167) (PF06165)
642492.Clole_2017(PF03477) (PF13597)
642492.Clole_3722(PF06013)(plastid)
642492.Clole_1949(PF13276)(mitochondrial)
642492.Clole_0563(PF13551) (PF13592)
642492.Clole_0399(PF02709)(mitochondrial)
642492.Clole_3667(PF00759)(ER)
642492.Clole_0365(PF09587)(mitochondrial)
642492.Clole_3988(PF17167) (PF06165)
642492.Clole_3989(PF17167) (PF06165)
642492.Clole_0377(PF09587)(mitochondrial)
642492.Clole_4074(PF13551) (PF13592)
642492.Clole_2020(PF03477) (PF13597)
642492.Clole_3512(PF01416)(mitochondrial)
642492.Clole_3881(PF02709)(mitochondrial)
642492.Clole_3233(PF06165) (PF17167)
642492.Clole_3757(PF06013)plastid
642492.Clole_1055(PF14249)
642492.Clole_3320(PF14526)
642492.Clole_0279(PF00882)
642492.Clole_4012(PF13276)
642492.Clole_4011(PF13518)
642492.Clole_1202(PF13246)
642492.Clole_1424(PF13276)
642492.Clole_1843(PF00145)
642492.Clole_3009(PF14526)
642492.Clole_0469(PF01554)
642492.Clole_0922(PF00488)
642492.Clole_0921(PF00488)
642492.Clole_3903(PF00488)
642492.Clole_0206(PF16472)
642492.Clole_1986(PF00302)
642492.Clole_1530(PF01554)
642492.Clole_2994(PF13518)
642492.Clole_2995(PF01554)
642492.Clole_2993(PF13276)
642492.Clole_3972(PF01554)
642492.Clole_2194(PF12437)
642492.Clole_2191(PF13518)
642492.Clole_3625(PF00137)
642492.Clole_3624(PF00137)
642492.Clole_0943(PF02732)
642492.Clole_1527(PF00543)
642492.Clole_2614(PF13518)
642492.Clole_1412(PF13276)
642492.Clole_3704(PF06777)
642492.Clole_3702(PF00543)
642492.Clole_3035(PF16472)
642492.Clole_0433(PF00543)
642492.Clole_1899(PF13518)
642492.Clole_0547(PF06100)
642492.Clole_0732(PF00145)
642492.Clole_2393(PF02906)
642492.Clole_2394(PF02906)
642492.Clole_3735(PF06013)
642492.Clole_3738(PF06013)
642492.Clole_1951(PF00059)
642492.Clole_1950(PF13276)
642492.Clole_2806PF10601not used
642492.Clole_3949(PF01554)
642492.Clole_1618(PF13276)
642492.Clole_1619(PF13518)
642492.Clole_0188(PF13276)
642492.Clole_3720(PF13276)
642492.Clole_0414(PF06013)
642492.Clole_3393(PF13276)
642492.Clole_0564(PF00488)
642492.Clole_3719(PF06013)
642492.Clole_4099(PF01554)
642492.Clole_1377(PF12646)
642492.Clole_1578(PF02906)
642492.Clole_3446(PF01554)
642492.Clole_0400(PF02709)
642492.Clole_1977(PF00543)
642492.Clole_3266(PF01554)
642492.Clole_0189(PF13518)
642492.Clole_1363(PF01991)
642492.Clole_2030(PF08367)
642492.Clole_2217(PF14249)
642492.Clole_3292(PF14526)
642492.Clole_4188PF11443
642492.Clole_1006(PF10371)
642492.Clole_1004(PF10371)
642492.Clole_2027(PF10371)
642492.Clole_2207(PF13276)
642492.Clole_3460(PF01416)
642492.Clole_4061(PF14526)
642492.Clole_2478(PF13246)
642492.Clole_0219(PF12681)
642492.Clole_1900(PF13276)
642492.Clole_0697(PF01554)
642492.Clole_3098PF03155
642492.Clole_0233(PF00145)
642492.Clole_0231(PF00145)
642492.Clole_2870(PF00302)
642492.Clole_4050(PF14526)
642492.Clole_1790(PF08367)
642492.Clole_2041(PF02906)
642492.Clole_1668(PF01416)
642492.Clole_1939(PF00488)
642492.Clole_0536(PF13518)
642492.Clole_0537(PF13276)
642492.Clole_3131(PF03477)
642492.Clole_4238(PF12437)
642492.Clole_2866(PF13518)
642492.Clole_2867(PF13276)
642492.Clole_0037(PF01554)
642492.Clole_1499(PF14526)
642492.Clole_0198(PF13276)
642492.Clole_2323(PF03477)
642492.Clole_3301(PF01795)
642492.Clole_2890(PF12681)
642492.Clole_2400(PF02906)
642492.Clole_2338(PF01795)
642492.Clole_2244(PF00488)
642492.Clole_2247(PF01554)
642492.Clole_3686(PF00882)
642492.Clole_3755(PF06013)
642492.Clole_3756(PF06013)
642492.Clole_3759(PF16472)
642492.Clole_0240(PF14526)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================