Effective results for Prevotella bergensis DSM 17361 (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 46 proteins (5 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585502.HMPREF0645_1634PF05089 PF12972 PF12971ER
585502.HMPREF0645_1471PF05089 PF12972 PF12971ER
585502.HMPREF0645_1470PF05089 PF12972 PF12971ER
585502.HMPREF0645_1734(PF03648) (PF15979)ER
585502.HMPREF0645_0343(PF03051)ER
585502.HMPREF0645_0383(PF13905)ER
585502.HMPREF0645_1889(PF16355)ER
585502.HMPREF0645_1572(PF01095)ER
585502.HMPREF0645_0987(PF00295)ER
585502.HMPREF0645_1297(PF03051)ER
585502.HMPREF0645_1633(PF13905)ER
585502.HMPREF0645_1632(PF13905)ER
585502.HMPREF0645_1569(PF01095)ER
585502.HMPREF0645_1821(PF03051)ER
585502.HMPREF0645_2023(PF03415)ER
585502.HMPREF0645_1341(PF00295)ER
585502.HMPREF0645_2473(PF16355)ER
585502.HMPREF0645_0684(PF15979)ER
585502.HMPREF0645_0532(PF13905)ER
585502.HMPREF0645_2785(PF03415)ER
585502.HMPREF0645_1069(PF00295)ER
585502.HMPREF0645_1057(PF16889)ER
585502.HMPREF0645_1059(PF16332)ER
585502.HMPREF0645_0871(PF16355)(mitochondrial)
585502.HMPREF0645_2438(PF13905)ER
585502.HMPREF0645_1083(PF13905)ER
585502.HMPREF0645_1712(PF03648)ER
585502.HMPREF0645_2175(PF16355)ER
585502.HMPREF0645_2172(PF00295)ER
585502.HMPREF0645_0045(PF01095)ER
585502.HMPREF0645_2279(PF16011)(mitochondrial)
585502.HMPREF0645_0926(PF05970) PF02689
585502.HMPREF0645_1532(PF05970) PF02689
585502.HMPREF0645_2774(PF13155)
585502.HMPREF0645_2554(PF13155)
585502.HMPREF0645_1544(PF13155)
585502.HMPREF0645_0776(PF00295)
585502.HMPREF0645_1865(PF03630)
585502.HMPREF0645_1056(PF16889)not used
585502.HMPREF0645_0928(PF01715)
585502.HMPREF0645_2162(PF16314)
585502.HMPREF0645_0111(PF05693)
585502.HMPREF0645_2753(PF13155)
585502.HMPREF0645_0129(PF01715)
585502.HMPREF0645_0432(PF13155)
585502.HMPREF0645_1098(PF16355)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================