Effective results for Streptococcus mitis SK321 (eggnog40)

Summary

Number of putative secreted proteins: 71
- Predicted by T4SEpre: 71
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 14 proteins (3 high, 11 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585202.SMSK321_0958PF09683ER
585202.SMSK321_1507+ER
585202.SMSK321_1168+ER
585202.SMSK321_0752+ER
585202.SMSK321_0564(PF05704)mitochondrial
585202.SMSK321_0316+ER
585202.SMSK321_1541+ER
585202.SMSK321_1599+ER
585202.SMSK321_1211PF09683ER; (ER)
585202.SMSK321_0488+ER
585202.SMSK321_0193+ER
585202.SMSK321_1009+(mitochondrial); (plastid)
585202.SMSK321_0059+mitochondrial
585202.SMSK321_1496(PF03083)(ER)
585202.SMSK321_1709(PF03596)ER
585202.SMSK321_0489+ER
585202.SMSK321_1738PF02916ER
585202.SMSK321_0245(PF03083)ER
585202.SMSK321_1650+ER
585202.SMSK321_1639+mitochondrial; (mitochondrial)
585202.SMSK321_1097+(mitochondrial)
585202.SMSK321_0150+(mitochondrial)
585202.SMSK321_0134+
585202.SMSK321_0220+
585202.SMSK321_0221+
585202.SMSK321_1617+
585202.SMSK321_0026+
585202.SMSK321_0206+
585202.SMSK321_0971+
585202.SMSK321_0375+
585202.SMSK321_0189+
585202.SMSK321_0168+
585202.SMSK321_0301+
585202.SMSK321_0413+
585202.SMSK321_1453+
585202.SMSK321_0176+
585202.SMSK321_0779+
585202.SMSK321_0794(PF04991)
585202.SMSK321_1047+
585202.SMSK321_0541+
585202.SMSK321_1237+
585202.SMSK321_0432+
585202.SMSK321_1122+
585202.SMSK321_1207+
585202.SMSK321_1063(PF08975)
585202.SMSK321_0521+
585202.SMSK321_1698+
585202.SMSK321_1459+
585202.SMSK321_0847+
585202.SMSK321_0440+
585202.SMSK321_1486+
585202.SMSK321_0295+
585202.SMSK321_0474+
585202.SMSK321_1475+
585202.SMSK321_1011+
585202.SMSK321_1702+
585202.SMSK321_0265+
585202.SMSK321_0462+
585202.SMSK321_1736+
585202.SMSK321_1257+
585202.SMSK321_0703(PF04991)
585202.SMSK321_0702(PF04991)
585202.SMSK321_1381+
585202.SMSK321_0490+
585202.SMSK321_0925(PF03596)
585202.SMSK321_0660(PF12344)
585202.SMSK321_0714+
585202.SMSK321_1622+
585202.SMSK321_0657(PF12344)
585202.SMSK321_1637+
585202.SMSK321_1743+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================