Effective results for Gemella sanguinis M325 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 22 proteins (3 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
562983.HMPREF0433_00861				(PF03083)	ER
562983.HMPREF0433_00888				(PF03083)	(ER)
562983.HMPREF0433_01053				(PF01717)	(mitochondrial)
562983.HMPREF0433_01253				(PF06280)	(ER)
562983.HMPREF0433_00521				(PF06280)	ER
562983.HMPREF0433_00546				(PF04991)	(ER)
562983.HMPREF0433_00157				(PF01717)	(mitochondrial)
562983.HMPREF0433_01052				(PF01717)
562983.HMPREF0433_01271				PF02916
562983.HMPREF0433_01266				(PF04991)
562983.HMPREF0433_01063				(PF00610)
562983.HMPREF0433_01537				(PF01633)
562983.HMPREF0433_01514				(PF01633)
562983.HMPREF0433_01163				(PF01717)
562983.HMPREF0433_01162				(PF01717)
562983.HMPREF0433_00395				(PF03848)
562983.HMPREF0433_00394				(PF03848)
562983.HMPREF0433_01389				PF02037
562983.HMPREF0433_00633				PF00910
562983.HMPREF0433_00551				(PF04991)
562983.HMPREF0433_00552				(PF04991)
562983.HMPREF0433_00557				(PF01633)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================