Effective results for Gemella haemolysans ATCC 10379 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 23 proteins (5 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
546270.GEMHA0001_0590(PF08002)(mitochondrial); mitochondrial
546270.GEMHA0001_1128(PF05704)(mitochondrial)
546270.GEMHA0001_1141PF02916(ER)
546270.GEMHA0001_1096(PF04991)ER
546270.GEMHA0001_1098(PF04991)(ER)
546270.GEMHA0001_0145(PF05448)(mitochondrial); mitochondrial
546270.GEMHA0001_1698PF00380(mitochondrial)
546270.GEMHA0001_1251(PF03848)(plastid)
546270.GEMHA0001_0924PF02987
546270.GEMHA0001_1089(PF01633)
546270.GEMHA0001_0053(PF10437)
546270.GEMHA0001_1069(PF00070)
546270.GEMHA0001_0001PF02987not used
546270.GEMHA0001_0712PF00380not used
546270.GEMHA0001_1247(PF03848)
546270.GEMHA0001_0379(PF01633)
546270.GEMHA0001_0402(PF08002)
546270.GEMHA0001_0411(PF08002)not used
546270.GEMHA0001_0984(PF05448)
546270.GEMHA0001_1172(PF10437)
546270.GEMHA0001_1174(PF10437)
546270.GEMHA0001_1135(PF04991)
546270.GEMHA0001_0144(PF05448)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================