Effective results for Lactobacillus casei BL23 (eggnog40)

Summary

Number of putative secreted proteins: 108
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 108 proteins (22 high, 86 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
543734.LCABL_08710PF13936 (PF00665)mitochondrial; (mitochondrial)
543734.LCABL_31190(PF12821)ER
543734.LCABL_06510(PF00665)mitochondrial; (mitochondrial)
543734.LCABL_25400(PF05738)ER
543734.LCABL_25420(PF05738)ER
543734.LCABL_05330(PF06280)(mitochondrial)
543734.LCABL_26030(PF05738)ER
543734.LCABL_05820(PF00665)(mitochondrial)
543734.LCABL_26780(PF05738)(ER)
543734.LCABL_24520(PF06280)ER
543734.LCABL_04040(PF00359)mitochondrial; (mitochondrial)
543734.LCABL_13630(PF06736)ER; (ER)
543734.LCABL_05200(PF05738)ER
543734.LCABL_04490(PF00215)(ER)
543734.LCABL_02640(PF12821)ER
543734.LCABL_04290(PF01116)(mitochondrial)
543734.LCABL_27740(PF06736)ER
543734.LCABL_06450(PF00665)mitochondrial; (mitochondrial)
543734.LCABL_21580(PF03577)mitochondrial; (mitochondrial)
543734.LCABL_23730(PF00665)mitochondrial
543734.LCABL_05180(PF00359)(mitochondrial)
543734.LCABL_04000PF13936 (PF00665)
543734.LCABL_10080PF13936 (PF00665)
543734.LCABL_03570PF13936 (PF00665)
543734.LCABL_05740PF13936 (PF00665)
543734.LCABL_07720(PF00689) (PF00690)
543734.LCABL_28840(PF13518)(ER)
543734.LCABL_24000PF13936 (PF00665)
543734.LCABL_06230(PF00689) (PF00690)
543734.LCABL_25970PF13936 (PF00665)
543734.LCABL_20220(PF00689) (PF00690)
543734.LCABL_26180PF13936 (PF00665)
543734.LCABL_14580PF13936 (PF00665)
543734.LCABL_21240PF13936 (PF00665)
543734.LCABL_05320(PF06280)(mitochondrial)
543734.LCABL_29430PF13936 (PF00665)
543734.LCABL_21430PF13936 (PF00665)
543734.LCABL_13540PF13936 (PF00665)
543734.LCABL_18800PF13936 (PF00665)
543734.LCABL_11760(PF00689) (PF00690)
543734.LCABL_25840(PF00689) (PF00690)
543734.LCABL_24630(PF00689) (PF00690)
543734.LCABL_01440PF13936 (PF00665)
543734.LCABL_02240(PF01116)(ER)
543734.LCABL_05800(PF13518)(ER)
543734.LCABL_22480PF13936 (PF00665)
543734.LCABL_03740PF13936 (PF00665)
543734.LCABL_23050PF13936 (PF00665)
543734.LCABL_12620PF13936 (PF00665)
543734.LCABL_28770PF13936 (PF00665)
543734.LCABL_12580(PF13518)(ER)
543734.LCABL_06500(PF13518)not used
543734.LCABL_23610(PF03577)
543734.LCABL_27390(PF06736)
543734.LCABL_29050(PF00359)
543734.LCABL_21380(PF00665)
543734.LCABL_15690(PF00359)
543734.LCABL_25530(PF12821)
543734.LCABL_31050(PF00359)
543734.LCABL_06460(PF13518)not used
543734.LCABL_29450(PF01116)
543734.LCABL_31040(PF00359)
543734.LCABL_29180(PF01791)
543734.LCABL_07380(PF00359)
543734.LCABL_28210(PF00359)
543734.LCABL_01160(PF00690)
543734.LCABL_05060(PF16952)
543734.LCABL_03940(PF00359)
543734.LCABL_27620(PF00359)
543734.LCABL_03050(PF00359)
543734.LCABL_00390(PF03577)
543734.LCABL_29500(PF01116)
543734.LCABL_06340(PF01791)
543734.LCABL_24940(PF06026)
543734.LCABL_00170(PF06736)
543734.LCABL_13640(PF03577)
543734.LCABL_27630(PF01791)
543734.LCABL_03460(PF00359)
543734.LCABL_04510(PF00359)
543734.LCABL_03500(PF01116)
543734.LCABL_28660(PF06026)
543734.LCABL_29420(PF00359)
543734.LCABL_06590(PF13518)not used
543734.LCABL_29110(PF00215)
543734.LCABL_04070(PF00359)
543734.LCABL_21330(PF00665)
543734.LCABL_28430(PF00359)
543734.LCABL_04060(PF01116)
543734.LCABL_00320(PF06736)
543734.LCABL_04190(PF00215)
543734.LCABL_01070PF00068
543734.LCABL_04050(PF00359)
543734.LCABL_05010(PF01116)
543734.LCABL_00800(PF00359)
543734.LCABL_03930(PF01116)
543734.LCABL_28850(PF00665)
543734.LCABL_29160(PF06026)
543734.LCABL_03920(PF00359)
543734.LCABL_16730(PF00215)
543734.LCABL_23220PF00609
543734.LCABL_07440(PF01791)
543734.LCABL_05810(PF00665)
543734.LCABL_12570(PF00665)
543734.LCABL_29490(PF00359)
543734.LCABL_29140(PF00359)
543734.LCABL_00070(PF01791)
543734.LCABL_02740(PF01791)
543734.LCABL_04010(PF00359)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================