Effective results for Staphylococcus caprae M23864:W1 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 31 proteins (11 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525378.HMPREF0793_0474(PF11070)ER
525378.HMPREF0793_1432PF05257ER; (ER)
525378.HMPREF0793_0630PF05257(mitochondrial)
525378.HMPREF0793_0931(PF05345)(mitochondrial)
525378.HMPREF0793_1339PF05257(mitochondrial)
525378.HMPREF0793_0458(PF06039)(ER)
525378.HMPREF0793_0388PF05257(ER)
525378.HMPREF0793_1896PF05257(mitochondrial)
525378.HMPREF0793_1649(PF06039)
525378.HMPREF0793_0729PF05257
525378.HMPREF0793_2344(PF09419)
525378.HMPREF0793_0711(PF06039)
525378.HMPREF0793_0887(PF06039)
525378.HMPREF0793_0525PF08771
525378.HMPREF0793_2563(PF05345)
525378.HMPREF0793_2038(PF01715)
525378.HMPREF0793_2037(PF01715)
525378.HMPREF0793_0392PF05257
525378.HMPREF0793_2559(PF05345)not used
525378.HMPREF0793_2556(PF05345)
525378.HMPREF0793_0956(PF03059)
525378.HMPREF0793_2042(PF06838)
525378.HMPREF0793_2043(PF06838)not used
525378.HMPREF0793_1149PF05257
525378.HMPREF0793_1413(PF05495)
525378.HMPREF0793_1168(PF05345)not used
525378.HMPREF0793_1169(PF05345)not used
525378.HMPREF0793_1508PF05257
525378.HMPREF0793_0822PF05257
525378.HMPREF0793_0064(PF03630)
525378.HMPREF0793_0930(PF05345)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================