Effective results for Lactobacillus vaginalis DSM 5837 = ATCC 49540 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 29 proteins (2 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525366.HMPREF0549_1844(PF03577)(mitochondrial); (plastid)
525366.HMPREF0549_0787(PF00413)ER
525366.HMPREF0549_1814(PF00413)ER
525366.HMPREF0549_1241(PF02275)(ER)
525366.HMPREF0549_1468(PF00056)(ER)
525366.HMPREF0549_0539(PF03099) (PF10437)
525366.HMPREF0549_0411(PF03099) (PF10437)
525366.HMPREF0549_1200(PF03099) (PF10437)
525366.HMPREF0549_0463(PF03099) (PF10437)
525366.HMPREF0549_0308(PF00056)
525366.HMPREF0549_0300(PF00173)
525366.HMPREF0549_0058(PF02275)
525366.HMPREF0549_1075(PF00056)
525366.HMPREF0549_1106(PF03577)
525366.HMPREF0549_1107(PF03577)
525366.HMPREF0549_1102(PF00173)
525366.HMPREF0549_1289(PF00958)
525366.HMPREF0549_1059(PF03099)not used
525366.HMPREF0549_1300(PF00413)
525366.HMPREF0549_0172(PF03577)
525366.HMPREF0549_1417PF00380
525366.HMPREF0549_1418PF00380not used
525366.HMPREF0549_1625(PF00056)
525366.HMPREF0549_0562(PF00958)not used
525366.HMPREF0549_1186(PF03577)
525366.HMPREF0549_1239(PF03577)
525366.HMPREF0549_0338(PF02275)
525366.HMPREF0549_0061(PF03099)
525366.HMPREF0549_0323(PF00056)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================