Effective results for Chryseobacterium gleum ATCC 35910 (eggnog40)

Summary

Number of putative secreted proteins: 244
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 59 eukaryotic-like domains, contained in 244 proteins (14 high, 230 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525257.HMPREF0204_10886(PF00041) (PF04231)ER
525257.HMPREF0204_12394(PF00041) (PF04231)ER
525257.HMPREF0204_11293(PF09112) (PF09113)ER
525257.HMPREF0204_14282(PF00041) (PF13583)ER
525257.HMPREF0204_11683(PF00041) (PF13583)ER
525257.HMPREF0204_12685PF07677 (PF07678)ER
525257.HMPREF0204_13884(PF00041) (PF13583)ER
525257.HMPREF0204_13881(PF00041) (PF04231)ER
525257.HMPREF0204_13436(PF00041) (PF13583)ER
525257.HMPREF0204_14699(PF04389)ER
525257.HMPREF0204_14180(PF04389)ER
525257.HMPREF0204_14181(PF04389)ER
525257.HMPREF0204_14182(PF04389)ER
525257.HMPREF0204_10956(PF00326)(mitochondrial); mitochondrial
525257.HMPREF0204_13281(PF02055)ER
525257.HMPREF0204_12779(PF02230)ER
525257.HMPREF0204_13604(PF11028)ER; (ER)
525257.HMPREF0204_12487(PF00041)ER
525257.HMPREF0204_11478(PF00326)(ER)
525257.HMPREF0204_15110(PF03534)ER
525257.HMPREF0204_14428(PF00326)ER
525257.HMPREF0204_14646(PF00041)ER
525257.HMPREF0204_14644(PF00041)ER
525257.HMPREF0204_13382(PF04389)ER
525257.HMPREF0204_10559(PF04389)ER
525257.HMPREF0204_11863(PF00326)ER
525257.HMPREF0204_11601(PF01823)ER
525257.HMPREF0204_11269(PF00326)ER; (ER)
525257.HMPREF0204_11283(PF00326)(ER)
525257.HMPREF0204_14341(PF02112)ER
525257.HMPREF0204_10140PF16670(ER)
525257.HMPREF0204_13811(PF11918)ER
525257.HMPREF0204_13036(PF00326)ER
525257.HMPREF0204_12858(PF00326)ER
525257.HMPREF0204_14090(PF04389)ER
525257.HMPREF0204_10919(PF07998)ER
525257.HMPREF0204_12196(PF13287)(ER)
525257.HMPREF0204_11947(PF01400)(mitochondrial); mitochondrial
525257.HMPREF0204_12863(PF02230)ER
525257.HMPREF0204_11760(PF13905)ER
525257.HMPREF0204_10347(PF03534)(mitochondrial)
525257.HMPREF0204_10585PF03388ER
525257.HMPREF0204_10586PF03388ER
525257.HMPREF0204_13909(PF04389)ER
525257.HMPREF0204_13911(PF04389)ER
525257.HMPREF0204_12317(PF04231)ER
525257.HMPREF0204_12310(PF01062)(mitochondrial); mitochondrial
525257.HMPREF0204_11567(PF05572)ER
525257.HMPREF0204_12887(PF00027)(ER)
525257.HMPREF0204_11989(PF09154)ER
525257.HMPREF0204_15247(PF01062)ER
525257.HMPREF0204_10328(PF01062)mitochondrial
525257.HMPREF0204_14594(PF13287)ER
525257.HMPREF0204_13698(PF13905)ER
525257.HMPREF0204_13695(PF00326)ER
525257.HMPREF0204_12274(PF00326)ER
525257.HMPREF0204_13859(PF00027)(mitochondrial)
525257.HMPREF0204_14909PF16670ER
525257.HMPREF0204_13688(PF05572)ER
525257.HMPREF0204_14122(PF00326)ER
525257.HMPREF0204_15191(PF03432)mitochondrial
525257.HMPREF0204_15045(PF01062)(mitochondrial); mitochondrial
525257.HMPREF0204_10018(PF13905)ER
525257.HMPREF0204_14151(PF02055)ER
525257.HMPREF0204_14154(PF02055)(ER)
525257.HMPREF0204_13093(PF03432)mitochondrial
525257.HMPREF0204_11684(PF00041)ER
525257.HMPREF0204_15039(PF04231)ER
525257.HMPREF0204_15140(PF13905)ER
525257.HMPREF0204_12135PF01630ER
525257.HMPREF0204_11308(PF13583)(mitochondrial)
525257.HMPREF0204_15024(PF00326)ER
525257.HMPREF0204_10074(PF05572)ER
525257.HMPREF0204_10671(PF01062)(mitochondrial); mitochondrial
525257.HMPREF0204_14317(PF11028)ER
525257.HMPREF0204_10850(PF14938)ER
525257.HMPREF0204_13745(PF03432)mitochondrial
525257.HMPREF0204_14652(PF01062)ER
525257.HMPREF0204_11531(PF03432)(mitochondrial)
525257.HMPREF0204_11791(PF03974)ER
525257.HMPREF0204_15166(PF00326)ER
525257.HMPREF0204_14167(PF04389)ER
525257.HMPREF0204_13336(PF13905)ER
525257.HMPREF0204_12750(PF03974)ER
525257.HMPREF0204_11671(PF11028)ER
525257.HMPREF0204_11674(PF16317)ER
525257.HMPREF0204_12973(PF03432)mitochondrial
525257.HMPREF0204_10528(PF00041)ER
525257.HMPREF0204_10527(PF00041)ER
525257.HMPREF0204_12658(PF00326)ER
525257.HMPREF0204_11665(PF01400)ER
525257.HMPREF0204_12955(PF01131) (PF01751)
525257.HMPREF0204_13372(PF00027)(mitochondrial)
525257.HMPREF0204_13725(PF01131) (PF01751)
525257.HMPREF0204_10605(PF03534)(ER)
525257.HMPREF0204_14067(PF11799) (PF00817)
525257.HMPREF0204_14824(PF11799) (PF00817)
525257.HMPREF0204_12301(PF11799) (PF00817)
525257.HMPREF0204_11758(PF11799) (PF00817)
525257.HMPREF0204_13067(PF01131) (PF01751)
525257.HMPREF0204_12930(PF11799) (PF00817)
525257.HMPREF0204_12653(PF01131) (PF01751)
525257.HMPREF0204_12921(PF03432)(mitochondrial)
525257.HMPREF0204_14817(PF01131) (PF01751)
525257.HMPREF0204_12356(PF12681)(ER)
525257.HMPREF0204_15153(PF11799) (PF00817)
525257.HMPREF0204_10500(PF11799) (PF00817)
525257.HMPREF0204_13150(PF06100)(ER)
525257.HMPREF0204_15221(PF01131) (PF01751)
525257.HMPREF0204_10981(PF01131) (PF01751)
525257.HMPREF0204_13428(PF13376)
525257.HMPREF0204_13199(PF00027)
525257.HMPREF0204_14964(PF01597)
525257.HMPREF0204_14989(PF03432)
525257.HMPREF0204_13998(PF13532)
525257.HMPREF0204_13774(PF00899)
525257.HMPREF0204_13996(PF09537)
525257.HMPREF0204_13972(PF00027)
525257.HMPREF0204_11057(PF00899)
525257.HMPREF0204_12826(PF14542)
525257.HMPREF0204_12622(PF00027)
525257.HMPREF0204_10725(PF04120)
525257.HMPREF0204_14356(PF09537)
525257.HMPREF0204_13560(PF13518)
525257.HMPREF0204_14647(PF07733)
525257.HMPREF0204_12764(PF01062)
525257.HMPREF0204_13013(PF01597)
525257.HMPREF0204_12941(PF13155)
525257.HMPREF0204_11266(PF00326)
525257.HMPREF0204_15129(PF00899)
525257.HMPREF0204_10393(PF13376)
525257.HMPREF0204_13716(PF00027)
525257.HMPREF0204_10574(PF13366)
525257.HMPREF0204_12154(PF13518)
525257.HMPREF0204_11702(PF13155)
525257.HMPREF0204_12841(PF12681)
525257.HMPREF0204_12844(PF00027)
525257.HMPREF0204_10141PF16670
525257.HMPREF0204_11140(PF00899)
525257.HMPREF0204_14394(PF13518)
525257.HMPREF0204_13145(PF06100)
525257.HMPREF0204_13401(PF01751)
525257.HMPREF0204_14882(PF02464)
525257.HMPREF0204_13819(PF00027)
525257.HMPREF0204_12452(PF06100)
525257.HMPREF0204_14522(PF01751)
525257.HMPREF0204_14417(PF13518)
525257.HMPREF0204_14847(PF00326)
525257.HMPREF0204_14255(PF13621)
525257.HMPREF0204_14678(PF00326)
525257.HMPREF0204_13809(PF00027)
525257.HMPREF0204_13020(PF00899)
525257.HMPREF0204_12990PF01348
525257.HMPREF0204_14066(PF07733)
525257.HMPREF0204_14845(PF00027)
525257.HMPREF0204_10665(PF03534)
525257.HMPREF0204_12619(PF00027)
525257.HMPREF0204_12186(PF13532)
525257.HMPREF0204_14714(PF13155)
525257.HMPREF0204_11950(PF00027)
525257.HMPREF0204_10330(PF13621)
525257.HMPREF0204_15075(PF00709)
525257.HMPREF0204_14279(PF00027)
525257.HMPREF0204_14298(PF00027)
525257.HMPREF0204_10804(PF14542)
525257.HMPREF0204_14855(PF04120)
525257.HMPREF0204_12268(PF03432)
525257.HMPREF0204_13912(PF09414)
525257.HMPREF0204_13910(PF04389)
525257.HMPREF0204_12062(PF00027)
525257.HMPREF0204_15246(PF00899)
525257.HMPREF0204_14593(PF00027)
525257.HMPREF0204_14047(PF13366)
525257.HMPREF0204_13214(PF00899)
525257.HMPREF0204_10635PF16994
525257.HMPREF0204_13458(PF00027)
525257.HMPREF0204_14822(PF13532)
525257.HMPREF0204_10814(PF03200)
525257.HMPREF0204_14825(PF07733)
525257.HMPREF0204_13851(PF02464)
525257.HMPREF0204_12300(PF07733)
525257.HMPREF0204_12303(PF13532)
525257.HMPREF0204_11972(PF00041)
525257.HMPREF0204_12894(PF13906)
525257.HMPREF0204_11757(PF09154)
525257.HMPREF0204_15052(PF01597)
525257.HMPREF0204_10003(PF01597)
525257.HMPREF0204_14585(PF00027)
525257.HMPREF0204_14903(PF02230)
525257.HMPREF0204_14830(PF02464)
525257.HMPREF0204_12241(PF13518)
525257.HMPREF0204_14125(PF00027)
525257.HMPREF0204_14120(PF00027)
525257.HMPREF0204_12645(PF14542)
525257.HMPREF0204_12647(PF02230)
525257.HMPREF0204_15001(PF00899)
525257.HMPREF0204_12931(PF07733)
525257.HMPREF0204_15262(PF00027)
525257.HMPREF0204_14023(PF00027)
525257.HMPREF0204_14804(PF00326)
525257.HMPREF0204_13781PF01348
525257.HMPREF0204_12650(PF00027)
525257.HMPREF0204_11518(PF15610)
525257.HMPREF0204_12928(PF13532)
525257.HMPREF0204_14327(PF00027)
525257.HMPREF0204_14321(PF00027)
525257.HMPREF0204_10846PF02750
525257.HMPREF0204_10843(PF09414)
525257.HMPREF0204_13863(PF00027)
525257.HMPREF0204_12351(PF00027)
525257.HMPREF0204_11044(PF13366)
525257.HMPREF0204_11306(PF14542)
525257.HMPREF0204_11300(PF14542)
525257.HMPREF0204_14003(PF04120)
525257.HMPREF0204_14796(PF03432)
525257.HMPREF0204_14005(PF13376)
525257.HMPREF0204_14002(PF02464)
525257.HMPREF0204_10210(PF00027)
525257.HMPREF0204_15151(PF09537)
525257.HMPREF0204_15152(PF07733)
525257.HMPREF0204_10502(PF13376)
525257.HMPREF0204_13630(PF13376)
525257.HMPREF0204_12230(PF00899)
525257.HMPREF0204_15011(PF13155)
525257.HMPREF0204_10539(PF00326)
525257.HMPREF0204_10220(PF13621)
525257.HMPREF0204_13534(PF13366)
525257.HMPREF0204_13759PF01348
525257.HMPREF0204_12598PF07247
525257.HMPREF0204_12597PF07247
525257.HMPREF0204_12573(PF00027)
525257.HMPREF0204_11495(PF03200)
525257.HMPREF0204_15227(PF00027)
525257.HMPREF0204_14574(PF13621)
525257.HMPREF0204_14680(PF13518)
525257.HMPREF0204_14376(PF00027)
525257.HMPREF0204_10231(PF00709)
525257.HMPREF0204_12219(PF13155)
525257.HMPREF0204_13965(PF00027)
525257.HMPREF0204_11664(PF00709)
525257.HMPREF0204_11663(PF00027)
525257.HMPREF0204_11245(PF00027)
525257.HMPREF0204_11069(PF00027)
525257.HMPREF0204_11117(PF00326)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================