Effective results for Oceanimonas sp. GK1 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 38 proteins (0 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
511062.GU3_11660(PF03553)ER
511062.GU3_13890(PF03553)ER
511062.GU3_00175(PF03553)ER
511062.GU3_08105(PF03553)ER
511062.GU3_02290(PF05706)(ER)
511062.GU3_07815(PF02028)ER
511062.GU3_06830(PF02028)ER
511062.GU3_06825(PF02028)ER
511062.GU3_07980(PF02028)ER
511062.GU3_07850(PF02028)ER
511062.GU3_01935(PF02028)ER
511062.GU3_00210(PF03553)(ER)
511062.GU3_10920(PF03553)ER
511062.GU3_05245(PF01527)
511062.GU3_05330(PF01527)
511062.GU3_04225(PF01527)
511062.GU3_11615(PF01527)
511062.GU3_01155(PF02028)
511062.GU3_06895(PF02028)
511062.GU3_07935(PF13430)
511062.GU3_07920(PF13430)
511062.GU3_14530(PF03553)
511062.GU3_13895(PF13875)
511062.GU3_05505(PF01527)
511062.GU3_12025(PF01527)
511062.GU3_00110(PF03553)
511062.GU3_15570(PF01527)
511062.GU3_13660(PF01527)
511062.GU3_03245(PF01527)
511062.GU3_12655(PF01527)
511062.GU3_03720(PF01527)
511062.GU3_09465(PF01527)
511062.GU3_13360(PF09811)
511062.GU3_08255(PF01527)
511062.GU3_11540(PF01527)
511062.GU3_05910(PF01527)
511062.GU3_11885(PF01527)
511062.GU3_02585(PF03553)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================