Effective results for Corynebacterium urealyticum DSM 7109 (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 48 proteins (31 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
504474.cur_1823(PF13276)mitochondrial
504474.cur_1821(PF13276)(mitochondrial); mitochondrial
504474.cur_1394(PF13276)(mitochondrial)
504474.cur_0043(PF11070)ER
504474.cur_1919PF00872
504474.cur_1918PF00872
504474.cur_1917PF00872
504474.cur_1708PF00872
504474.cur_0273PF00872
504474.cur_1458PF00872
504474.cur_1459(PF13276)
504474.cur_1457PF00872
504474.cur_1454(PF13276)
504474.cur_1599(PF13276)
504474.cur_1597PF00872
504474.cur_0514(PF13276)
504474.cur_0513PF00872
504474.cur_1615PF00872
504474.cur_1926PF00872
504474.cur_1927PF00872
504474.cur_1924PF00872
504474.cur_1920PF00872
504474.cur_1820PF00872
504474.cur_0682(PF13276)
504474.cur_0338PF00872
504474.cur_1311PF00872
504474.cur_1492(PF13276)
504474.cur_1493PF00872
504474.cur_1491PF00872
504474.cur_1543PF00872
504474.cur_0221PF08213not used
504474.cur_0036PF00872
504474.cur_0034PF00872
504474.cur_0760(PF13276)
504474.cur_1875(PF13276)
504474.cur_1876PF00872
504474.cur_0026PF00872
504474.cur_1770(PF00755)
504474.cur_0628PF00872
504474.cur_0802(PF01746)
504474.cur_0803(PF01746)
504474.cur_0920PF00872
504474.cur_0284(PF13276)
504474.cur_0285PF00872
504474.cur_1648PF00872
504474.cur_1654(PF13276)
504474.cur_1655PF00872
504474.cur_1650PF00872

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================