Effective results for Thermomonospora curvata DSM 43183 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 42 proteins (2 high, 40 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
471852.Tcur_3072				(PF05257)	(mitochondrial)
471852.Tcur_0390				(PF12695)	ER
471852.Tcur_1278				(PF12695)	ER
471852.Tcur_4623				(PF12695)	mitochondrial
471852.Tcur_3175				(PF01419)	(mitochondrial)
471852.Tcur_0496				(PF06241)	mitochondrial
471852.Tcur_3405				(PF05076)
471852.Tcur_3625				(PF01135)
471852.Tcur_1369				(PF05257)
471852.Tcur_4449				PF08213	not used
471852.Tcur_1966				(PF09265)
471852.Tcur_0749				(PF01135)
471852.Tcur_0740				(PF05076)
471852.Tcur_1929				(PF00755)
471852.Tcur_0183				(PF13768)
471852.Tcur_2802				(PF04107)
471852.Tcur_0237				(PF01025)
471852.Tcur_3294				(PF03161)
471852.Tcur_2073				(PF05257)
471852.Tcur_0400				(PF13768)
471852.Tcur_2824				(PF15891)
471852.Tcur_3384				(PF04107)
471852.Tcur_4708				(PF05076)
471852.Tcur_3869				PF12873
471852.Tcur_3641				(PF04107)
471852.Tcur_1394				(PF01025)
471852.Tcur_4611				(PF01135)
471852.Tcur_0132				(PF01135)
471852.Tcur_1874				(PF01025)
471852.Tcur_4753				(PF04107)
471852.Tcur_3764				(PF01135)
471852.Tcur_0805				(PF03803)
471852.Tcur_3775				(PF01135)
471852.Tcur_4645				(PF01135)
471852.Tcur_0322				(PF00102)
471852.Tcur_0037				(PF05257)
471852.Tcur_0925				(PF01135)
471852.Tcur_0736				(PF05076)
471852.Tcur_2448				(PF04107)
471852.Tcur_0780				(PF11977)
471852.Tcur_4200				(PF04107)
471852.Tcur_4515				(PF13768)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================