Effective results for Streptococcus gordonii str. Challis substr. CH1 (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 89
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 25 proteins (2 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
467705.SGO_0296(PF03083)ER
467705.SGO_0970(PF00344)ER
467705.SGO_0162(PF03577)ER
467705.SGO_1165+ER
467705.SGO_1700+ER; (ER)
467705.SGO_0002+mitochondrial; (mitochondrial)
467705.SGO_1178+ER
467705.SGO_0721(PF03577)ER
467705.SGO_0724(PF03577)ER
467705.SGO_1740(PF03083)(ER)
467705.SGO_0825+ER
467705.SGO_1463+ER
467705.SGO_0600+(mitochondrial)
467705.SGO_0112+ER
467705.SGO_1063+ER
467705.SGO_1651+ER
467705.SGO_2013(PF05257)ER
467705.SGO_0137+mitochondrial; (mitochondrial)
467705.SGO_1860+ER; (ER)
467705.SGO_1918+ER
467705.SGO_2107(PF05257)ER
467705.SGO_0586+ER
467705.SGO_0888+ER
467705.SGO_0086+ER
467705.SGO_1932PF10296ER
467705.SGO_2028PF02916(ER)
467705.SGO_0212(PF05257)ER
467705.SGO_1583+ER
467705.SGO_1585+ER
467705.SGO_1928+(mitochondrial)
467705.SGO_0203+(ER)
467705.SGO_1313+ER
467705.SGO_1546+ER
467705.SGO_2094(PF05257)ER
467705.SGO_0316(PF06280)(ER)
467705.SGO_1377+(ER); ER
467705.SGO_1379+(ER)
467705.SGO_0566(PF06280)ER
467705.SGO_1965(PF00344)mitochondrial
467705.SGO_0458+ER
467705.SGO_0801+(ER)
467705.SGO_1806(PF07837) (PF02971)
467705.SGO_1854+(mitochondrial)
467705.SGO_0317(PF06280)(ER)
467705.SGO_1966+(mitochondrial)
467705.SGO_0809+
467705.SGO_0021+
467705.SGO_0585+
467705.SGO_1234+
467705.SGO_0579+
467705.SGO_1687+
467705.SGO_0878+
467705.SGO_0358+
467705.SGO_2040+
467705.SGO_1452+
467705.SGO_0434(PF02938)
467705.SGO_0942+
467705.SGO_0113+
467705.SGO_1395+
467705.SGO_1068+
467705.SGO_2060(PF02938)
467705.SGO_0126+
467705.SGO_1094+
467705.SGO_1278(PF09359)
467705.SGO_1279(PF09359)
467705.SGO_1388+
467705.SGO_1389+
467705.SGO_0719+
467705.SGO_0626+
467705.SGO_0408+
467705.SGO_0092(PF09359)
467705.SGO_0272+
467705.SGO_0653+
467705.SGO_1671+
467705.SGO_0080+
467705.SGO_0262(PF03577)
467705.SGO_0642+
467705.SGO_1118+
467705.SGO_0518+
467705.SGO_1939+
467705.SGO_2022+
467705.SGO_0361+
467705.SGO_0063+
467705.SGO_0208(PF03644)
467705.SGO_0197+
467705.SGO_0330(PF09359)
467705.SGO_0680+
467705.SGO_1484+
467705.SGO_1834+
467705.SGO_0230+
467705.SGO_0228+
467705.SGO_0221+
467705.SGO_0035+
467705.SGO_1782+
467705.SGO_1960+
467705.SGO_0675+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================