Effective results for Glaciecola sp. HTCC2999 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 35 proteins (8 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
455436.GHTCC_010100005674(PF05592) (PF08531)mitochondrial
455436.GHTCC_010100001419(PF05592) (PF08531)mitochondrial
455436.GHTCC_010100005684(PF05592) (PF08531)ER
455436.GHTCC_010100004363(PF05592) (PF08531)ER
455436.GHTCC_010100008956(PF05592) (PF08531)ER
455436.GHTCC_010100001394(PF17132)ER
455436.GHTCC_010100004413PF15892(ER); ER
455436.GHTCC_010100004333(PF14099)ER
455436.GHTCC_010100004338PF15892ER
455436.GHTCC_010100008926PF15892ER
455436.GHTCC_010100004318PF15892ER
455436.GHTCC_010100008946(PF17132)ER
455436.GHTCC_010100004453PF15892ER
455436.GHTCC_010100004378PF15892(mitochondrial); (plastid)
455436.GHTCC_010100004343(PF17132)ER
455436.GHTCC_010100001399(PF05592) (PF08531)
455436.GHTCC_010100005614(PF13276)(mitochondrial)
455436.GHTCC_010100009061(PF13276)(mitochondrial)
455436.GHTCC_010100009076(PF05592) (PF08531)
455436.GHTCC_010100005170(PF13276)(mitochondrial)
455436.GHTCC_010100010833(PF13276)(mitochondrial)
455436.GHTCC_010100003904(PF13276)(mitochondrial)
455436.GHTCC_010100009526(PF13276)(mitochondrial)
455436.GHTCC_010100005357(PF13276)(mitochondrial)
455436.GHTCC_010100001369(PF13276)(mitochondrial)
455436.GHTCC_010100001409(PF17132)
455436.GHTCC_010100001414(PF05592)
455436.GHTCC_010100006817(PF13276)
455436.GHTCC_010100009021PF15892
455436.GHTCC_010100006244(PF10013)not used
455436.GHTCC_010100004243PF15892
455436.GHTCC_010100006587(PF13276)
455436.GHTCC_010100009980(PF02460)
455436.GHTCC_010100005689(PF17132)
455436.GHTCC_010100008931(PF14099)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================