Effective results for Clostridium perfringens NCTC 8239 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 63 proteins (13 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
451757.AC7_1539(PF13402) (PF00754) (PF16403)ER
451757.AC7_0321(PF03644) (PF00754)ER
451757.AC7_1062(PF13402) (PF00754) (PF16403)(ER)
451757.AC7_1491PF07555 (PF00754)ER
451757.AC7_0849(PF03644) (PF00754)ER
451757.AC7_1537PF07555 (PF00754)ER
451757.AC7_0038PF00882 (PF01477)ER
451757.AC7_0906PF07555 (PF00754)mitochondrial; (mitochondrial)
451757.AC7_0206PF07555 (PF00754)ER; (ER)
451757.AC7_0891(PF00754)ER; (mitochondrial)
451757.AC7_0405(PF00754)ER
451757.AC7_2900(PF11070)ER
451757.AC7_1074(PF16403)ER
451757.AC7_1492(PF00754)(mitochondrial)
451757.AC7_2130(PF00754)ER
451757.AC7_1621PF12135 (PF00754)(ER)
451757.AC7_1529(PF00754)ER
451757.AC7_0138(PF05738)ER
451757.AC7_2673(PF00163)mitochondrial
451757.AC7_1296(PF00754)(ER); ER
451757.AC7_1294(PF01902)(mitochondrial); mitochondrial
451757.AC7_0169(PF05738)ER
451757.AC7_0800(PF05738)ER
451757.AC7_0803(PF05738)ER; (ER)
451757.AC7_2692(PF00163)mitochondrial
451757.AC7_0170(PF05738)ER
451757.AC7_1776(PF14566)ER
451757.AC7_0140(PF05738)ER
451757.AC7_0559(PF00754)ER
451757.AC7_0411(PF02915)
451757.AC7_0091(PF02915)
451757.AC7_1852(PF06968)
451757.AC7_1450(PF06777)
451757.AC7_2484(PF01633)
451757.AC7_2482(PF01633)
451757.AC7_0953PF13859
451757.AC7_0880(PF02915)
451757.AC7_0088(PF06968)
451757.AC7_1590(PF02915)
451757.AC7_2360(PF12513)
451757.AC7_2611PF00882
451757.AC7_1064(PF02915)
451757.AC7_1640PF00882
451757.AC7_0137(PF05738)
451757.AC7_1713(PF00754)
451757.AC7_0717(PF02915)
451757.AC7_1850PF12646
451757.AC7_2431(PF15610)
451757.AC7_0120(PF06968)
451757.AC7_2642(PF02915)
451757.AC7_0009(PF07892)
451757.AC7_0641(PF01633)
451757.AC7_0738PF00882
451757.AC7_1282(PF01633)
451757.AC7_2890(PF12638)
451757.AC7_0755PF06467not used
451757.AC7_0756(PF01902)
451757.AC7_0692(PF00754)
451757.AC7_2868PF12646
451757.AC7_1797(PF06968)
451757.AC7_2852(PF07892)
451757.AC7_1895(PF01991)
451757.AC7_0150(PF02915)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================