Effective results for Leeuwenhoekiella blandensis MED217 (eggnog40)

Summary

Number of putative secreted proteins: 142
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 39 eukaryotic-like domains, contained in 142 proteins (1 high, 141 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
398720.MED217_11289(PF14686) PF06045 (PF14683)ER
398720.MED217_13234(PF16334) (PF16335) (PF17168) (PF08760)plastid
398720.MED217_10032(PF02777) (PF00081)ER
398720.MED217_12944(PF10569) (PF07678)ER
398720.MED217_02955(PF07593)ER
398720.MED217_02950(PF07593)(mitochondrial); mitochondrial
398720.MED217_05307(PF00295)(mitochondrial)
398720.MED217_11609(PF07593)ER
398720.MED217_04657(PF00295)(ER)
398720.MED217_02945(PF07593)ER
398720.MED217_02780(PF07971)ER
398720.MED217_11914(PF04253)ER
398720.MED217_06517(PF10988)ER
398720.MED217_13194(PF01541)mitochondrial
398720.MED217_11599(PF04616)ER
398720.MED217_11594(PF04616)(ER)
398720.MED217_07246(PF10988)ER
398720.MED217_12939(PF04616)ER
398720.MED217_16130(PF10988)ER
398720.MED217_17885(PF15902)mitochondrial
398720.MED217_13414(PF02929)ER
398720.MED217_13364(PF07971)ER
398720.MED217_12774(PF10988)(mitochondrial)
398720.MED217_07611(PF15902)ER
398720.MED217_17670(PF04616)ER
398720.MED217_07721(PF04616)ER
398720.MED217_13224(PF04450)ER
398720.MED217_09470(PF16313)ER
398720.MED217_18456(PF10988)ER
398720.MED217_05422(PF04616)ER
398720.MED217_02230(PF00930)ER
398720.MED217_13304(PF07971)ER
398720.MED217_14530(PF14307)(ER)
398720.MED217_11589(PF04616)ER
398720.MED217_05947(PF04616)ER
398720.MED217_08800(PF00295)ER
398720.MED217_15065(PF01527)(mitochondrial); mitochondrial
398720.MED217_13459(PF00295)ER
398720.MED217_09927(PF07593)ER
398720.MED217_07711(PF04616)ER
398720.MED217_15470(PF12388)ER
398720.MED217_12314(PF00930)ER
398720.MED217_09240(PF16313)ER
398720.MED217_03390(PF00930)ER
398720.MED217_01730(PF16313)ER
398720.MED217_13264(PF04616)ER
398720.MED217_12504(PF00930)ER
398720.MED217_18351(PF03321)mitochondrial
398720.MED217_07886(PF15902)ER
398720.MED217_01390(PF04616)ER
398720.MED217_13279(PF07971)(ER)
398720.MED217_13274(PF07971)ER
398720.MED217_01240(PF00930)ER
398720.MED217_13484(PF04616)ER
398720.MED217_13656(PF14307)ER
398720.MED217_08345(PF04616)ER
398720.MED217_07756(PF02929)ER
398720.MED217_02120(PF10988)ER
398720.MED217_09020(PF00386)ER
398720.MED217_09687(PF02929)ER; (ER)
398720.MED217_09977(PF04616)ER
398720.MED217_08790(PF04616)ER
398720.MED217_08795(PF01095)ER
398720.MED217_11879(PF00295)ER
398720.MED217_02810(PF07971)ER
398720.MED217_00160(PF10569)ER
398720.MED217_01540(PF01095)ER
398720.MED217_09772(PF02777) (PF00081)
398720.MED217_17075(PF02777) (PF00081)
398720.MED217_00065(PF02777) (PF00081)
398720.MED217_15730(PF01541)(mitochondrial)
398720.MED217_15735(PF01541)(mitochondrial)
398720.MED217_13816(PF01541)(plastid)
398720.MED217_16160(PF03321)(plastid)
398720.MED217_07781(PF02929)
398720.MED217_15565(PF05598)
398720.MED217_14370(PF03321)
398720.MED217_13034(PF11074)
398720.MED217_14775(PF10013)not used
398720.MED217_08300(PF13683)
398720.MED217_07811(PF01541)
398720.MED217_15580(PF13276)
398720.MED217_15585(PF01527)
398720.MED217_12114(PF05598)
398720.MED217_12234(PF01527)
398720.MED217_01950(PF09949)
398720.MED217_15110(PF01527)
398720.MED217_09455(PF09537)
398720.MED217_12239(PF13683)
398720.MED217_07581(PF07766)
398720.MED217_12224(PF13276)
398720.MED217_15000(PF05598)
398720.MED217_15105(PF13683)
398720.MED217_08265(PF13276)
398720.MED217_08260(PF01527)
398720.MED217_12219(PF01527)
398720.MED217_09000(PF01541)
398720.MED217_15005(PF13683)
398720.MED217_06951(PF13683)
398720.MED217_06956(PF01527)
398720.MED217_07606(PF09949)
398720.MED217_12149(PF05598)
398720.MED217_12209(PF05598)
398720.MED217_15010(PF01527)
398720.MED217_15680(PF01527)
398720.MED217_15685(PF13276)
398720.MED217_04432(PF12388)
398720.MED217_17915(PF13276)
398720.MED217_17910(PF01527)
398720.MED217_15060(PF13276)
398720.MED217_01470(PF04616)
398720.MED217_08810(PF01095)
398720.MED217_12094(PF01527)
398720.MED217_01725(PF09537)
398720.MED217_01720(PF09537)
398720.MED217_12534(PF13683)
398720.MED217_15070(PF05598)
398720.MED217_05812(PF13276)
398720.MED217_05817(PF01527)
398720.MED217_12084(PF05598)
398720.MED217_03735(PF13276)
398720.MED217_03730(PF01527)
398720.MED217_12089(PF13683)
398720.MED217_00735(PF01541)
398720.MED217_11364(PF01541)
398720.MED217_18751(PF01541)
398720.MED217_09727(PF13276)
398720.MED217_08295(PF01527)
398720.MED217_09732(PF01527)
398720.MED217_00755(PF08695)
398720.MED217_12194(PF05598)
398720.MED217_08180(PF01541)
398720.MED217_12709(PF05598)
398720.MED217_10914(PF01823)
398720.MED217_01565(PF04616)
398720.MED217_09757(PF01527)
398720.MED217_09752(PF13683)
398720.MED217_15090(PF13276)
398720.MED217_15095(PF01527)
398720.MED217_00550(PF01541)
398720.MED217_09762(PF05598)
398720.MED217_09782(PF05598)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================