Effective results for Thioalkalivibrio sulfidiphilus HL-EbGr7 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 38 proteins (1 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
396588.Tgr7_0077(PF12974)ER
396588.Tgr7_0913(PF12974)ER
396588.Tgr7_0645(PF12974)ER
396588.Tgr7_0806(PF12974)ER
396588.Tgr7_1818(PF12974)ER
396588.Tgr7_0625(PF06695)ER
396588.Tgr7_2070(PF02635)ER
396588.Tgr7_1117(PF12974)ER
396588.Tgr7_3212(PF02635)ER
396588.Tgr7_3213(PF02635)(mitochondrial)
396588.Tgr7_0564(PF02635)ER
396588.Tgr7_2490(PF02635)ER
396588.Tgr7_0177(PF00862)(ER)
396588.Tgr7_2208(PF01597)
396588.Tgr7_2209(PF02635)
396588.Tgr7_2210(PF01597)
396588.Tgr7_0465(PF13366)
396588.Tgr7_2187(PF02635)
396588.Tgr7_2188(PF02635)
396588.Tgr7_2438(PF02732)
396588.Tgr7_1298(PF12974)
396588.Tgr7_0478(PF06258)
396588.Tgr7_0476(PF06258)
396588.Tgr7_0707(PF12899)
396588.Tgr7_2758(PF01597)
396588.Tgr7_1604(PF10013)not used
396588.Tgr7_2897(PF12974)
396588.Tgr7_2386(PF13366)
396588.Tgr7_3134(PF01597)
396588.Tgr7_1132PF05887
396588.Tgr7_2876(PF13366)
396588.Tgr7_2451(PF12974)
396588.Tgr7_1692(PF05189)
396588.Tgr7_1753(PF02635)
396588.Tgr7_0976(PF13366)
396588.Tgr7_3078(PF06695)
396588.Tgr7_1242(PF13366)
396588.Tgr7_1141(PF02635)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================