Effective results for Chlorobium ferrooxidans DSM 13031 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 29 proteins (2 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
377431.CferDRAFT_0483(PF02374)(mitochondrial)
377431.CferDRAFT_0322(PF02374)mitochondrial
377431.CferDRAFT_0778(PF02374)(mitochondrial); mitochondrial
377431.CferDRAFT_0907(PF01895)ER
377431.CferDRAFT_1890(PF06414)(mitochondrial)
377431.CferDRAFT_1056(PF02374)(mitochondrial); mitochondrial
377431.CferDRAFT_1052(PF02374)mitochondrial
377431.CferDRAFT_0582PF05700(mitochondrial)
377431.CferDRAFT_1984(PF02374)(mitochondrial)
377431.CferDRAFT_0526(PF12159) (PF10693)
377431.CferDRAFT_0798(PF00856)
377431.CferDRAFT_0799(PF00856)
377431.CferDRAFT_1376PF10046
377431.CferDRAFT_0810(PF06414)
377431.CferDRAFT_0589(PF00856)
377431.CferDRAFT_0801(PF00856)
377431.CferDRAFT_1503(PF16114)
377431.CferDRAFT_0639(PF11965)
377431.CferDRAFT_0638(PF11965)
377431.CferDRAFT_0917(PF11965)
377431.CferDRAFT_1299(PF12640)
377431.CferDRAFT_1446(PF01895)
377431.CferDRAFT_1445(PF01895)
377431.CferDRAFT_1444(PF01895)
377431.CferDRAFT_2021(PF02026)
377431.CferDRAFT_0479(PF14701)
377431.CferDRAFT_0858(PF01895)
377431.CferDRAFT_0498(PF09366)
377431.CferDRAFT_1543(PF09366)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================