Effective results for Chromobacterium violaceum ATCC 12472 (eggnog40)

Summary

Number of putative secreted proteins: 508
- Predicted by EffectiveT3: 144 (high confidence), 215 (low confidence)
- Predicted by EffectiveCCBD: 14 within, 7 before, 31 behind expected region 25..70aa
- Predicted by T4SEpre: 68
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 62 proteins (7 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
243365.CV_0025+ER
243365.CV_2340+(mitochondrial)
243365.CV_2344+mitochondrial
243365.CV_3164(>)ER
243365.CV_3346+ER
243365.CV_1347(>)mitochondrial; (mitochondrial)
243365.CV_4244+ER
243365.CV_2400(PF01627)ER
243365.CV_1471+(mitochondrial); (plastid)
243365.CV_2975+ER
243365.CV_0304+ER
243365.CV_0031+ER
243365.CV_4344(>)ER; (ER)
243365.CV_1666+(ER)
243365.CV_4162+(mitochondrial)
243365.CV_1318+(mitochondrial); (plastid)
243365.CV_2213(PF01627)ER
243365.CV_3109(>)ER
243365.CV_1304+ER
243365.CV_2899(>)mitochondrial
243365.CV_3131(>)ER
243365.CV_3262PF12142(mitochondrial)
243365.CV_0063+ER
243365.CV_4142(PF02911)(ER)
243365.CV_2305+(PF07195)(plastid)
243365.CV_3273PF12902(mitochondrial)
243365.CV_0095+ER
243365.CV_0781+(mitochondrial); mitochondrial
243365.CV_2534(>)(ER); ER
243365.CV_2643(PF01627)(mitochondrial); (plastid)
243365.CV_0885+ER
243365.CV_1055+(mitochondrial); plastid
243365.CV_3470+(mitochondrial); (plastid)
243365.CV_1901(>)ER
243365.CV_0592+ER
243365.CV_3854+mitochondrial; (mitochondrial)
243365.CV_1978+ER
243365.CV_1599(>)ER
243365.CV_1371(PF11958)ER
243365.CV_0980(PF05524)ER
243365.CV_3456+(mitochondrial)
243365.CV_3188+ER
243365.CV_1212+ER
243365.CV_0188+ER
243365.CV_1458+(mitochondrial)
243365.CV_1369(PF11958)ER
243365.CV_2863+ER
243365.CV_2600(PF01627)(ER)
243365.CV_0998(PF00657)ER
243365.CV_3090+(mitochondrial); plastid
243365.CV_4213+ER
243365.CV_3424+ER
243365.CV_3083(>)ER
243365.CV_4297+ER
243365.CV_3051+(ER); (plastid)
243365.CV_1013+mitochondrial
243365.CV_1169+(ER)
243365.CV_3156+mitochondrial
243365.CV_3571+ER
243365.CV_1626(>)(ER)
243365.CV_1627+ER
243365.CV_1621(PF01627)(ER)
243365.CV_4386(>)ER
243365.CV_0395+ER
243365.CV_4389(<)ER
243365.CV_2769PF13127ER
243365.CV_0483+ER
243365.CV_2773PF13127ER
243365.CV_1049+(plastid)
243365.CV_1468(+)(mitochondrial); mitochondrial
243365.CV_1980+(plastid)
243365.CV_3165+(mitochondrial)
243365.CV_3015(+)(mitochondrial)
243365.CV_3011+(plastid)
243365.CV_4232(+)(mitochondrial)
243365.CV_1062+(mitochondrial)
243365.CV_4349(+)ER
243365.CV_0217+(ER)
243365.CV_4355+(mitochondrial)
243365.CV_1821+PF12902
243365.CV_1334+(mitochondrial)
243365.CV_2887(+)(mitochondrial); plastid
243365.CV_3128+plastid
243365.CV_3872+(plastid)
243365.CV_3879+(plastid)
243365.CV_3878+(plastid)
243365.CV_1321+plastid
243365.CV_1918(PF13332)(ER)
243365.CV_3206(+)+plastid
243365.CV_0465+(plastid)
243365.CV_2495+(plastid)
243365.CV_1237(+)(mitochondrial)
243365.CV_3858+(>)
243365.CV_3440(+)mitochondrial
243365.CV_0307++
243365.CV_4180(+)(mitochondrial)
243365.CV_2994+(PF07195)
243365.CV_2292+plastid
243365.CV_3521(+)(mitochondrial)
243365.CV_3021(>)(ER)
243365.CV_3955(+)(mitochondrial)
243365.CV_4020+(mitochondrial)
243365.CV_1010++
243365.CV_3439(+)(mitochondrial); plastid
243365.CV_3332(+)(mitochondrial)
243365.CV_3729(+)(PF07195)(plastid)
243365.CV_0360(PF00657)(mitochondrial)
243365.CV_0362+(PF00657)
243365.CV_1168(+)ER
243365.CV_0012(+)+(PF09994)
243365.CV_1740+(plastid)
243365.CV_2542(<)+
243365.CV_2090(+)+(plastid)
243365.CV_3703(+)(mitochondrial)
243365.CV_0523+(plastid)
243365.CV_3382(+)(mitochondrial); (plastid)
243365.CV_0543(+)mitochondrial; plastid
243365.CV_1702(+)mitochondrial; (mitochondrial)
243365.CV_4133+(mitochondrial)
243365.CV_3170(+)(ER)
243365.CV_1730+(ER)
243365.CV_0021+
243365.CV_4036+
243365.CV_1469+
243365.CV_1190(PF01627)
243365.CV_0482+
243365.CV_1983+
243365.CV_1873+
243365.CV_3169+
243365.CV_3168+
243365.CV_3835+
243365.CV_1476+
243365.CV_1470+
243365.CV_2579+
243365.CV_2578(PF07720)
243365.CV_2575+
243365.CV_2973(>)
243365.CV_2750+
243365.CV_2355(>)
243365.CV_1155(+)plastid
243365.CV_3117(+)(PF00887)
243365.CV_3335(+)(mitochondrial)
243365.CV_1531+
243365.CV_1668+
243365.CV_1408(+)(plastid)
243365.CV_1409+
243365.CV_2508+
243365.CV_0378+
243365.CV_2694+
243365.CV_2611+
243365.CV_2038+
243365.CV_3102(>)
243365.CV_0671(<)
243365.CV_0609+
243365.CV_1412+
243365.CV_2510(PF01627)
243365.CV_1099+
243365.CV_1094(+)(>)
243365.CV_0841+
243365.CV_2684+
243365.CV_3137+
243365.CV_3132+
243365.CV_3267PF12902
243365.CV_3798+
243365.CV_1277+
243365.CV_1798(+)(plastid)
243365.CV_0663(<)
243365.CV_2832PF12902
243365.CV_2787+
243365.CV_2789+
243365.CV_0898(>)
243365.CV_0899+
243365.CV_0128+not used
243365.CV_3528+
243365.CV_3990(PF09994)
243365.CV_1920+
243365.CV_4206+
243365.CV_3877+
243365.CV_3876(PF07195)
243365.CV_1431(+)+
243365.CV_2536(+)plastid
243365.CV_1805+
243365.CV_2369+
243365.CV_3365+
243365.CV_0865(PF06500)
243365.CV_2311(PF05524)
243365.CV_2642(>)
243365.CV_2005+
243365.CV_2001+
243365.CV_0882(PF01627)
243365.CV_3467(<)
243365.CV_3205(PF01627)
243365.CV_4305+
243365.CV_0649+
243365.CV_1680+
243365.CV_1299+
243365.CV_4092+
243365.CV_2812+
243365.CV_2818(PF02911)
243365.CV_2251+
243365.CV_2498(PF01627)
243365.CV_2493+
243365.CV_2673+
243365.CV_1900(+)(plastid)
243365.CV_0255+
243365.CV_0417+
243365.CV_1234+
243365.CV_1236(+)plastid
243365.CV_3503(+)(PF01627)
243365.CV_0495(>)
243365.CV_0748(PF02911)
243365.CV_2668(+)+
243365.CV_1143+
243365.CV_2063(>)
243365.CV_0647+
243365.CV_3442(PF01627)
243365.CV_3447+
243365.CV_3999+
243365.CV_0402(+)+
243365.CV_4325+
243365.CV_3539(>)
243365.CV_2617(+)(plastid)
243365.CV_2440+
243365.CV_2270+
243365.CV_2271+
243365.CV_2878+
243365.CV_2871(PF13332)
243365.CV_2877+
243365.CV_2875+
243365.CV_2582+
243365.CV_2583+
243365.CV_2580+
243365.CV_2056+
243365.CV_0968(>)
243365.CV_3450(PF01627)
243365.CV_4090+
243365.CV_3052(PF05524)
243365.CV_1963(+)(PF10142)
243365.CV_3984+
243365.CV_3022+
243365.CV_1813+
243365.CV_0342+
243365.CV_0769(+)+
243365.CV_4212(>)
243365.CV_1581(PF01627)
243365.CV_2266(PF00657)
243365.CV_2869(PF13332)
243365.CV_1784+
243365.CV_2590+
243365.CV_2593+
243365.CV_2738+
243365.CV_2283+
243365.CV_2886+
243365.CV_2139+
243365.CV_2884+
243365.CV_0974(+)(PF00102)
243365.CV_3422(>)
243365.CV_1951(PF01627)
243365.CV_0422+
243365.CV_0421+
243365.CV_1244+
243365.CV_0516+
243365.CV_2957+
243365.CV_1003+
243365.CV_1000+
243365.CV_1481+
243365.CV_2852+
243365.CV_1429+
243365.CV_0115+
243365.CV_1012+
243365.CV_2149+
243365.CV_0944(>)
243365.CV_3099+
243365.CV_1837+
243365.CV_1830(+)(plastid)
243365.CV_0363(PF06500)
243365.CV_3895+not used
243365.CV_3549+
243365.CV_2837+
243365.CV_1764+
243365.CV_1763(+)(ER)
243365.CV_1387+
243365.CV_1386(PF00887)
243365.CV_1014(PF01627)
243365.CV_0604+
243365.CV_4039+
243365.CV_0614+
243365.CV_2620(PF07720)
243365.CV_0227(+)(mitochondrial)
243365.CV_4110+
243365.CV_3248(PF01627)
243365.CV_2159+
243365.CV_0957+
243365.CV_0721+
243365.CV_0959(+)(plastid)
243365.CV_3712+
243365.CV_3718+
243365.CV_3550+
243365.CV_1622+
243365.CV_0713(>)
243365.CV_0718+
243365.CV_3971(PF09994)
243365.CV_1710+
243365.CV_2433(+)(ER)
243365.CV_2436(PF09994)
243365.CV_2380(+)(mitochondrial)
243365.CV_2895+
243365.CV_2947+
243365.CV_2099+
243365.CV_0816(PF05524)
243365.CV_0042+
243365.CV_2656+
243365.CV_2164(>)
243365.CV_3142+not used
243365.CV_2831(+)(<)
243365.CV_1852(PF01627)
243365.CV_3386(+)(plastid)
243365.CV_0146(>)
243365.CV_0724+
243365.CV_0722+
243365.CV_4264(PF02911)
243365.CV_0010+
243365.CV_1709(+)(mitochondrial)
243365.CV_1703+
243365.CV_2422+
243365.CV_2917+
243365.CV_4139(+)(plastid)
243365.CV_4134(+)(mitochondrial)
243365.CV_4137(+)(plastid)
243365.CV_2396+
243365.CV_2398(PF01627)
243365.CV_2089(PF12513)
243365.CV_2770+
243365.CV_0009+
243365.CV_0635+
243365.CV_3912(>)
243365.CV_3913+
243365.CV_3772(<)
243365.CV_1864(PF01627)
243365.CV_3282+
243365.CV_0558(PF05524)
243365.CV_0731+
243365.CV_0730+
243365.CV_1732(+)+
243365.CV_2605+
243365.CV_1287(+)
243365.CV_2417(+)
243365.CV_1044(+)
243365.CV_2968(+)
243365.CV_2747(+)
243365.CV_0837(+)
243365.CV_2184(+)
243365.CV_3395(+)
243365.CV_3587(+)
243365.CV_3588(+)
243365.CV_0125(+)
243365.CV_3340(+)
243365.CV_3349+
243365.CV_0051(+)
243365.CV_1187(+)
243365.CV_1182(+)
243365.CV_0772(+)
243365.CV_2576(+)
243365.CV_2570(+)
243365.CV_2974(+)
243365.CV_2196(+)
243365.CV_0915(+)
243365.CV_3750(+)
243365.CV_3620(+)
243365.CV_1665(+)
243365.CV_1311(+)
243365.CV_1085(+)
243365.CV_0603(+)
243365.CV_2710(+)
243365.CV_0192(+)
243365.CV_2689(+)
243365.CV_2686(+)
243365.CV_2025(+)
243365.CV_2544(+)
243365.CV_0443(+)
243365.CV_3642(+)
243365.CV_4210(+)
243365.CV_3263(+)
243365.CV_3862(+)
243365.CV_2521(+)
243365.CV_2654(+)
243365.CV_1413(+)
243365.CV_3228(+)
243365.CV_3270(+)
243365.CV_0092(+)
243365.CV_0862(+)
243365.CV_0886(+)
243365.CV_0884(+)
243365.CV_3461(+)
243365.CV_3066(+)
243365.CV_0468(+)
243365.CV_0646(+)
243365.CV_1689(+)
243365.CV_3618(+)
243365.CV_2815(+)
243365.CV_1353(+)
243365.CV_2254(+)
243365.CV_3380(+)
243365.CV_1903(+)
243365.CV_3217(+)
243365.CV_1250(+)
243365.CV_0329(+)
243365.CV_3694(+)
243365.CV_4089(+)
243365.CV_2246(+)
243365.CV_2069(+)
243365.CV_3035(+)
243365.CV_4353(+)
243365.CV_2118(+)
243365.CV_3994(+)
243365.CV_0733(+)
243365.CV_4320(+)
243365.CV_4323(+)
243365.CV_3531(+)
243365.CV_0756(+)
243365.CV_1598(+)
243365.CV_3840(+)
243365.CV_2272(+)
243365.CV_2909(+)
243365.CV_2473(+)
243365.CV_0473(+)
243365.CV_3647(+)
243365.CV_2299(+)
243365.CV_0963(+)
243365.CV_3453(+)
243365.CV_3451(+)
243365.CV_1742(+)
243365.CV_1366(+)
243365.CV_0994(+)
243365.CV_2739(+)
243365.CV_2284(+)
243365.CV_1791(+)
243365.CV_0425(+)
243365.CV_0429(+)
243365.CV_1774(+)
243365.CV_0666(+)
243365.CV_0512(+)
243365.CV_1175(+)
243365.CV_0287(+)
243365.CV_0286(+)
243365.CV_0282(+)
243365.CV_1483(+)
243365.CV_1485(+)
243365.CV_1147(+)
243365.CV_3053(+)
243365.CV_4144(+)
243365.CV_4282(+)
243365.CV_2708(+)
243365.CV_4280(+)
243365.CV_3432(+)
243365.CV_1747(+)
243365.CV_1942(+)
243365.CV_0450(+)
243365.CV_1838(+)
243365.CV_0168(+)
243365.CV_0566(+)
243365.CV_1210(+)
243365.CV_1217(+)
243365.CV_1214(+)
243365.CV_0340(+)
243365.CV_0341(+)
243365.CV_2716(+)
243365.CV_3403(+)
243365.CV_0726(+)
243365.CV_3710(+)
243365.CV_3715(+)
243365.CV_0170(+)
243365.CV_3374(+)
243365.CV_1624(+)
243365.CV_1628(+)
243365.CV_1267(+)
243365.CV_1262(+)
243365.CV_1711(+)
243365.CV_2439(+)
243365.CV_3551(+)
243365.CV_1045(+)
243365.CV_1822(+)
243365.CV_2366(+)
243365.CV_2365(+)
243365.CV_1868(+)not used
243365.CV_4160(+)
243365.CV_3564(+)
243365.CV_4050(+)
243365.CV_0723(+)
243365.CV_1706(+)
243365.CV_1037(+)
243365.CV_4004(+)
243365.CV_2910(+)
243365.CV_2395(+)
243365.CV_2550(+)
243365.CV_2085(+)
243365.CV_2083(+)
243365.CV_0620(+)
243365.CV_0805(+)
243365.CV_0321(+)
243365.CV_0935(+)
243365.CV_0936(+)
243365.CV_3500(+)
243365.CV_1866(+)
243365.CV_1863(+)
243365.CV_3596(+)
243365.CV_3392(+)
243365.CV_1738(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 2.3 (23/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.0 (8/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================