Effective results for Erythrobacter sp. NAP1 (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 27 proteins (0 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
237727.NAP1_09897(PF04784)ER
237727.NAP1_09887(PF04784)ER
237727.NAP1_09892(PF04784)ER
237727.NAP1_05220(PF03073)ER
237727.NAP1_07785(PF08840)ER
237727.NAP1_09352(PF03073)ER
237727.NAP1_09902(PF04784)ER
237727.NAP1_05860(PF06455)ER
237727.NAP1_09362(PF03209)(ER)
237727.NAP1_01620(PF14108)ER
237727.NAP1_07055(PF08840)(ER)
237727.NAP1_07580(PF03073)(ER)
237727.NAP1_15318(PF14108)(ER)
237727.NAP1_14568(PF04325)
237727.NAP1_04465(PF13759)
237727.NAP1_00600(PF13661)
237727.NAP1_00595(PF13759)
237727.NAP1_00055(PF04325)
237727.NAP1_09412(PF03209)
237727.NAP1_04765(PF05019)
237727.NAP1_08297(PF10013)not used
237727.NAP1_11818(PF02933)
237727.NAP1_14538(PF04325)
237727.NAP1_00060(PF04325)not used
237727.NAP1_08627(PF01786)
237727.NAP1_04995(PF11815)
237727.NAP1_04755(PF05019)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================