Effective results for Rhodococcus erythropolis PR4 (eggnog40)

Summary

Number of putative secreted proteins: 265
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 40 eukaryotic-like domains, contained in 265 proteins (3 high, 262 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
234621.RER_51850(PF02803) (PF00108)mitochondrial
234621.RER_07830(PF02803) (PF00108)(mitochondrial)
234621.RER_54820(PF02803) (PF00108)mitochondrial; (mitochondrial)
234621.RER_28450(PF06974) (PF03007)(ER)
234621.RER_11860(PF06974) (PF03007)(ER); ER
234621.RER_56240(PF02803) (PF00108)(mitochondrial)
234621.RER_42090(PF00756)ER
234621.RER_55760(PF01844)mitochondrial; (mitochondrial)
234621.RER_34710(PF01497)ER; (mitochondrial)
234621.RER_01130(PF01497)(ER)
234621.RER_03100(PF00756)ER
234621.RER_07200(PF03659)mitochondrial
234621.RER_42060(PF01497)ER
234621.RER_46280(PF01497)(ER)
234621.RER_00140(PF03583)ER
234621.RER_38730(PF08354) (PF01575) PF16073
234621.RER_06930(PF01497)ER
234621.RER_45340(PF03583)ER
234621.RER_28150(PF13350)ER
234621.RER_53550(PF01497)ER
234621.RER_02160(PF00756)ER
234621.RER_10320(PF01497)(ER)
234621.RER_28390(PF01497)ER
234621.RER_47000(PF01497)ER
234621.RER_34630(PF03583)ER
234621.RER_40690(PF00756)ER; (ER)
234621.RER_10030(PF01844)(mitochondrial)
234621.RER_57160(PF03583)mitochondrial
234621.RER_07130(PF01844)mitochondrial; (mitochondrial)
234621.RER_55170(PF01497)ER
234621.RER_33880(PF00756)ER
234621.RER_57140(PF01844)mitochondrial; (mitochondrial)
234621.RER_27680(PF00756)mitochondrial
234621.RER_05900(PF03583)mitochondrial
234621.RER_37590(PF01497)ER
234621.RER_11100(PF01497)(mitochondrial); (plastid)
234621.RER_53740(PF01497)(mitochondrial)
234621.RER_16120(PF14249)(mitochondrial)
234621.RER_32050(PF01497)ER
234621.RER_18410(PF00756)ER
234621.RER_15360(PF00756)ER
234621.RER_53760(PF03583)ER; (mitochondrial)
234621.RER_19100(PF12740)(mitochondrial)
234621.RER_54720(PF13810)ER; (mitochondrial)
234621.RER_07640(PF17048)ER; (mitochondrial)
234621.RER_19830(PF12740)ER
234621.RER_38450(PF13810)(ER)
234621.RER_51030(PF02803) (PF00108)(mitochondrial)
234621.RER_34760(PF01844)mitochondrial; (mitochondrial)
234621.RER_48390(PF00756)ER
234621.RER_42080(PF00756)ER
234621.RER_40770(PF08326)mitochondrial; (mitochondrial)
234621.RER_03350(PF02656)ER; (ER)
234621.RER_57320(PF03583)ER
234621.RER_43390(PF01497)ER
234621.RER_10280(PF01497)ER
234621.RER_54800(PF13810)ER
234621.RER_03950(PF13452)mitochondrial; (mitochondrial)
234621.RER_00780(PF13350)mitochondrial
234621.RER_07250(PF03583)ER
234621.RER_04200(PF01844)(mitochondrial)
234621.RER_50840(PF04138)(mitochondrial)
234621.RER_21280(PF01844)mitochondrial; (mitochondrial)
234621.RER_43230(PF00890)mitochondrial; (mitochondrial)
234621.RER_10990(PF01497)(ER); (mitochondrial)
234621.RER_23560(PF01497)ER
234621.RER_04570(PF01497)(mitochondrial)
234621.RER_10310(PF13350)(mitochondrial)
234621.RER_56760(PF01497)ER
234621.RER_01510(PF01497)ER
234621.RER_23550(PF01497)mitochondrial
234621.RER_14670(PF00756)mitochondrial; plastid
234621.RER_48820(PF04138)mitochondrial; (mitochondrial)
234621.RER_15400(PF01497)ER
234621.RER_43360(PF01497)(mitochondrial)
234621.RER_54170(PF00756)mitochondrial
234621.RER_25840(PF01497)mitochondrial
234621.RER_54110(PF01497)(mitochondrial)
234621.RER_03160(PF01497)ER
234621.RER_51250(PF05088)(mitochondrial)
234621.RER_10410(PF01497)ER
234621.RER_58150(PF12740)ER; (ER)
234621.RER_24660(PF01497)ER
234621.RER_36790(PF01844)mitochondrial; (mitochondrial)
234621.RER_55290(PF03583)mitochondrial; (mitochondrial)
234621.RER_06080(PF03583)ER
234621.RER_49340(PF03583)ER
234621.RER_30630(PF00756)ER
234621.RER_57370(PF01497)ER
234621.RER_48770(PF03583)ER
234621.RER_07380(PF00890)(ER)
234621.RER_49190(PF02803) (PF00108)(ER)
234621.RER_48710(PF01844)mitochondrial; (mitochondrial)
234621.RER_27020(PF01497)mitochondrial
234621.RER_53250(PF13452)(mitochondrial)
234621.RER_17900(PF13622)(plastid)
234621.RER_07360(PF01575) (PF13452)
234621.RER_52080(PF02803) (PF00108)
234621.RER_49220(PF02803) (PF00108)
234621.RER_38940(PF02803) (PF00108)
234621.RER_51060(PF14863) (PF14864)
234621.RER_57020(PF01497)(ER)
234621.RER_52910(PF02803) (PF00108)
234621.RER_11210(PF02803) (PF00108)
234621.RER_12460(PF03007) (PF06974)
234621.RER_54590(PF01497)(mitochondrial)
234621.RER_50450(PF14863) (PF14864)
234621.RER_11450(PF14863) (PF14864)
234621.RER_44950(PF02803) (PF00108)
234621.RER_12130(PF14863) (PF14864)
234621.RER_02420(PF02803) (PF00108)
234621.RER_42680(PF02803) (PF00108)
234621.RER_11940(PF01497)(mitochondrial)
234621.RER_08110(PF13350)(ER)
234621.RER_15300(PF03007) (PF06974)
234621.RER_12070(PF02803) (PF00108)
234621.RER_51010(PF02803) (PF00108)
234621.RER_08940(PF02803) (PF00108)
234621.RER_49920(PF14863) (PF14864)
234621.RER_51940(PF02803) (PF00108)
234621.RER_28430(PF02803) (PF00108)
234621.RER_15290(PF06974) (PF03007)
234621.RER_33480(PF00310) (PF04898)
234621.RER_02170(PF00756)(mitochondrial)
234621.RER_32330(PF00756)(ER)
234621.RER_04010(PF02803) (PF00108)
234621.RER_56700(PF00310) (PF04898)
234621.RER_16290(PF06974) (PF03007)
234621.RER_09250(PF02803) (PF00108)
234621.RER_26770(PF13350)(ER)
234621.RER_00510(PF00310) (PF04898)
234621.RER_42140(PF03007) (PF06974)
234621.RER_49130(PF02803) (PF00108)
234621.RER_34070(PF03007) (PF06974)
234621.RER_14210(PF02803) (PF00108)
234621.RER_03800(PF02803) (PF00108)
234621.RER_50420(PF02656)(plastid)
234621.RER_44940(PF02803) (PF00108)
234621.RER_01420(PF02803) (PF00108)
234621.RER_48970(PF02803) (PF00108)
234621.RER_33950(PF03007) (PF06974)
234621.RER_01440(PF01575) (PF13452)
234621.RER_21760(PF03007) (PF06974)
234621.RER_02080(PF02803) (PF00108)
234621.RER_50720(PF01575) (PF13452)
234621.RER_51000(PF01575) (PF13452)
234621.RER_50780(PF13577)
234621.RER_55550(PF01575)
234621.RER_33860(PF00890)
234621.RER_31830(PF13622)
234621.RER_19650(PF06999)
234621.RER_49480(PF13577)
234621.RER_15890PF06911
234621.RER_50730(PF00108)
234621.RER_56330(PF00108)
234621.RER_14700(PF02656)
234621.RER_39770(PF01844)
234621.RER_49200(PF01575)
234621.RER_24960(PF09511)
234621.RER_44980(PF13622)
234621.RER_52950(PF01497)
234621.RER_23180(PF01844)
234621.RER_07120(PF00108)
234621.RER_20430(PF00890)
234621.RER_10270(PF00756)
234621.RER_18040(PF01844)
234621.RER_17130(PF13452)
234621.RER_51160(PF13577)
234621.RER_29400(PF02358)
234621.RER_58500(PF01844)
234621.RER_05800(PF05088)
234621.RER_10800(PF01575)
234621.RER_53440(PF00890)
234621.RER_55310(PF00890)
234621.RER_30320(PF13350)
234621.RER_44880(PF13577)
234621.RER_13670(PF00890)
234621.RER_59190(PF13816)
234621.RER_33600(PF00890)
234621.RER_48990(PF01575)
234621.RER_22780(PF01844)
234621.RER_34800(PF00890)
234621.RER_00970(PF01844)
234621.RER_10400(PF06999)
234621.RER_52990(PF01497)
234621.RER_36350(PF00756)
234621.RER_33450(PF13622)
234621.RER_54920(PF01575)
234621.RER_50760(PF13452)
234621.RER_26240(PF13577)
234621.RER_29120(PF13622)
234621.RER_01530(PF01497)
234621.RER_10010(PF04138)
234621.RER_15120(PF01844)
234621.RER_29140(PF13622)
234621.RER_34080(PF02358)
234621.RER_38550(PF13622)
234621.RER_08630(PF00756)
234621.RER_14240(PF01844)
234621.RER_51860(PF01575)
234621.RER_17910(PF01575)
234621.RER_16350PF08213not used
234621.RER_29470(PF00890)
234621.RER_29740(PF01497)
234621.RER_08510(PF13622)
234621.RER_07370(PF00890)
234621.RER_51050(PF00890)
234621.RER_43400(PF01497)
234621.RER_52510(PF13350)
234621.RER_57750(PF14078)
234621.RER_46970(PF00890)
234621.RER_56280(PF01844)
234621.RER_02360(PF04138)
234621.RER_58040(PF02656)
234621.RER_51710(PF13577)
234621.RER_42250(PF04505)
234621.RER_31220(PF03583)
234621.RER_07050(PF02358)
234621.RER_24500(PF04138)
234621.RER_51770(PF13577)
234621.RER_28930(PF16565)
234621.RER_07100(PF13452)
234621.RER_59360(PF06052)
234621.RER_49500(PF00890)
234621.RER_12410(PF00890)
234621.RER_21170(PF13350)
234621.RER_04730(PF06052)
234621.RER_11190(PF01575)
234621.RER_11420(PF01697)
234621.RER_57430(PF01575)
234621.RER_19740(PF01497)
234621.RER_38040(PF01497)
234621.RER_03080(PF14078)
234621.RER_49150(PF13452)
234621.RER_40300(PF00890)
234621.RER_48900(PF13622)
234621.RER_17140(PF01575)
234621.RER_08980(PF01497)
234621.RER_45050(PF01844)
234621.RER_48980(PF13452)
234621.RER_50200(PF01575)
234621.RER_50910(PF13577)
234621.RER_49110(PF13622)
234621.RER_15370(PF00756)
234621.RER_59700(PF01844)
234621.RER_43320(PF13577)
234621.RER_50440(PF01844)
234621.RER_08440(PF13452)
234621.RER_50930(PF13577)
234621.RER_03340(PF02656)
234621.RER_53240(PF01575)
234621.RER_48760(PF04505)
234621.RER_43490(PF01844)
234621.RER_50740(PF01575)
234621.RER_40600(PF13577)
234621.RER_16320(PF13622)
234621.RER_56590(PF01497)
234621.RER_18330(PF01575)
234621.RER_38310(PF05088)
234621.RER_21370(PF04138)
234621.RER_00150(PF03583)
234621.RER_49530(PF13577)
234621.RER_02470(PF04138)
234621.RER_40740(PF13577)
234621.RER_10160(PF01497)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================