Effective results for Synechococcus sp. CB0205 (eggnog40)

Summary

Number of putative secreted proteins: 130
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 102 eukaryotic-like domains, contained in 130 proteins (10 high, 120 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
232363.SCB02_010100013239(PF16639) (PF01333)(mitochondrial); plastid
232363.SCB02_010100006926(PF10716)ER
232363.SCB02_010100008760(PF04278)mitochondrial
232363.SCB02_010100006921(PF11460)ER
232363.SCB02_010100003943(PF01716)ER
232363.SCB02_010100008895(PF13326)ER
232363.SCB02_010100008930(PF11016)ER; (ER)
232363.SCB02_010100012642(PF01789)mitochondrial
232363.SCB02_010100012355(PF12437)mitochondrial
232363.SCB02_010100004691(PF11909)(mitochondrial); mitochondrial
232363.SCB02_010100010691(PF10693)(ER)
232363.SCB02_010100003011(PF01737)ER
232363.SCB02_010100009957(PF11152)ER
232363.SCB02_010100003878(PF07444)ER
232363.SCB02_010100008690PF16709ER
232363.SCB02_010100011316(PF04483)(mitochondrial)
232363.SCB02_010100002242(PF16166)ER
232363.SCB02_010100003913(PF04483)ER
232363.SCB02_010100004973(PF12899)(mitochondrial)
232363.SCB02_010100000399(PF07444)ER
232363.SCB02_010100006397(PF02392)(mitochondrial); (plastid)
232363.SCB02_010100007703(PF12437)(mitochondrial)
232363.SCB02_010100009350(PF07082)(mitochondrial)
232363.SCB02_010100013204(PF02507)ER
232363.SCB02_010100005130(PF11317)ER
232363.SCB02_010100002337(PF04481)mitochondrial
232363.SCB02_010100004525(PF12046)ER
232363.SCB02_010100000776(PF06514)ER
232363.SCB02_010100003453(PF00283)(ER); not used
232363.SCB02_010100012460(PF06298)ER; not used
232363.SCB02_010100006811(PF01744)(plastid)
232363.SCB02_010100001773(PF01947)plastid
232363.SCB02_010100012113PF08332(plastid)
232363.SCB02_010100003758(PF02468)ER; not used
232363.SCB02_010100005363(PF00504)mitochondrial; not used
232363.SCB02_010100001296(PF05154)(ER)
232363.SCB02_010100000394(PF06596)ER; not used
232363.SCB02_010100003673(PF09366)
232363.SCB02_010100003698(PF11378)
232363.SCB02_010100003458(PF00283)
232363.SCB02_010100005733(PF02941)
232363.SCB02_010100005206(PF02672)
232363.SCB02_010100004886(PF00796)not used
232363.SCB02_010100008970(PF08854)
232363.SCB02_010100010284(PF12204)
232363.SCB02_010100007743PF04098
232363.SCB02_010100000981(PF00124)
232363.SCB02_010100001890(PF05019)
232363.SCB02_010100008148(PF05154)
232363.SCB02_010100003448PF02419not used
232363.SCB02_010100003443(PF01788)
232363.SCB02_010100004891(PF02605)
232363.SCB02_010100013029(PF02529)not used
232363.SCB02_010100004654(PF10999)
232363.SCB02_010100011096(PF05019)
232363.SCB02_010100009687(PF05996)
232363.SCB02_010100012078PF16865
232363.SCB02_010100010139(PF09353)
232363.SCB02_010100009210(PF00124)
232363.SCB02_010100004133(PF00223)
232363.SCB02_010100000414(PF00504)
232363.SCB02_010100006070(PF00124)
232363.SCB02_010100005075(PF08853)
232363.SCB02_010100004128(PF00223)not used
232363.SCB02_010100004121(PF00223)
232363.SCB02_010100008303(PF05154)
232363.SCB02_010100008233PF04098
232363.SCB02_010100003763(PF00737)
232363.SCB02_010100004686(PF12617)
232363.SCB02_010100001096(PF11371)
232363.SCB02_010100001091(PF10664)
232363.SCB02_010100011111(PF12452)
232363.SCB02_010100011331(PF05969)not used
232363.SCB02_010100010881(PF02245)
232363.SCB02_010100000509(PF02943)
232363.SCB02_010100009942(PF03040)
232363.SCB02_010100010696(PF12159)
232363.SCB02_010100010219(PF11360)
232363.SCB02_010100008133(PF02245)not used
232363.SCB02_010100009535(PF11282)
232363.SCB02_010100012712PF08332not used
232363.SCB02_010100003748(PF02532)not used
232363.SCB02_010100008665(PF08847)
232363.SCB02_010100006422(PF08041)not used
232363.SCB02_010100012210(PF02672)
232363.SCB02_010100005423(PF11341)
232363.SCB02_010100005353(PF04983)
232363.SCB02_010100005358(PF04983)
232363.SCB02_010100003903(PF02245)
232363.SCB02_010100000926(PF11910)
232363.SCB02_010100000841(PF12095)
232363.SCB02_010100012028(PF06799)
232363.SCB02_010100005633(PF04839)
232363.SCB02_010100004168(PF05151)not used
232363.SCB02_010100000861(PF05421)
232363.SCB02_010100004398(PF05996)
232363.SCB02_010100004393(PF05996)
232363.SCB02_010100004620(PF14159)
232363.SCB02_010100009450(PF11947)
232363.SCB02_010100011371(PF11210)
232363.SCB02_010100009672(PF11347)
232363.SCB02_010100006417PF02005
232363.SCB02_010100005963(PF08855)
232363.SCB02_010100004560(PF02531)
232363.SCB02_010100013229(PF11267)
232363.SCB02_010100004036(PF09366)
232363.SCB02_010100010786PF03742not used
232363.SCB02_010100010766(PF11264)
232363.SCB02_010100011216(PF12527)
232363.SCB02_010100006392(PF00124)
232363.SCB02_010100003633(PF02533)not used
232363.SCB02_010100002657(PF11623)
232363.SCB02_010100012897(PF08417)
232363.SCB02_010100011511(PF12049)
232363.SCB02_010100007383(PF00504)
232363.SCB02_010100013209(PF01701)not used
232363.SCB02_010100011993(PF00504)not used
232363.SCB02_010100005000(PF02427)
232363.SCB02_010100005221(PF10063)
232363.SCB02_010100013838(PF02245)
232363.SCB02_010100011531(PF11833)
232363.SCB02_010100007183(PF13911)
232363.SCB02_010100006292(PF13355)
232363.SCB02_010100012532(PF10674)
232363.SCB02_010100010916(PF02245)
232363.SCB02_010100004980PF08332
232363.SCB02_010100005588(PF11805)
232363.SCB02_010100012997(PF14159)
232363.SCB02_010100004183(PF01405)not used
232363.SCB02_010100007378(PF00504)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================