Effective results for Ruminococcus champanellensis 18P13 = JCM 17042 (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 56 proteins (1 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
213810.RUM_05620(PF02018) (PF00759)ER
213810.RUM_15960(PF02018) (PF00759)mitochondrial; (mitochondrial)
213810.RUM_10780(PF02018)ER; (ER)
213810.RUM_23290(PF13306)ER
213810.RUM_20870(PF13306)ER
213810.RUM_12150(PF13306)ER
213810.RUM_22250(PF16990)(ER)
213810.RUM_21270(PF16990)ER
213810.RUM_23280(PF13306)ER
213810.RUM_12300(PF00150)ER
213810.RUM_18530(PF02018)ER
213810.RUM_23130(PF02018)ER
213810.RUM_11480(PF13306)ER
213810.RUM_10610(PF13306)ER
213810.RUM_15950(PF00759)ER
213810.RUM_03220(PF02012)ER
213810.RUM_21650(PF00150)(mitochondrial); (ER)
213810.RUM_15940(PF02018)(ER)
213810.RUM_10700(PF13306)ER
213810.RUM_02790(PF02012)ER
213810.RUM_10710(PF13287)ER
213810.RUM_05520(PF00150)ER
213810.RUM_08690(PF00759)(mitochondrial); mitochondrial
213810.RUM_23300(PF13306)ER
213810.RUM_01230(PF00759)(ER); ER
213810.RUM_02230(PF00150)ER
213810.RUM_06330(PF00150)mitochondrial; (mitochondrial)
213810.RUM_05540(PF16990)ER
213810.RUM_03400(PF02018)ER
213810.RUM_02800(PF00150)ER
213810.RUM_15270(PF16990)ER; (ER)
213810.RUM_08710(PF13306)ER
213810.RUM_18300(PF13287)ER
213810.RUM_15790(PF13306)ER
213810.RUM_10590(PF13306)ER
213810.RUM_09550(PF06662)mitochondrial; (mitochondrial)
213810.RUM_13140(PF00150)(ER); (mitochondrial)
213810.RUM_07020(PF02057)(mitochondrial)
213810.RUM_24010(PF00759)(ER)
213810.RUM_03950(PF00150)
213810.RUM_05130(PF13240)
213810.RUM_02460(PF12437)
213810.RUM_16590(PF12437)
213810.RUM_00640(PF13306)
213810.RUM_14490(PF00759)
213810.RUM_13880(PF14311)
213810.RUM_05460(PF02018)
213810.RUM_23840(PF02938)
213810.RUM_21370PF03179
213810.RUM_09650(PF13240)
213810.RUM_06150(PF02938)
213810.RUM_01530(PF13151)
213810.RUM_21140(PF13240)
213810.RUM_21420(PF01991)
213810.RUM_05110(PF13240)
213810.RUM_12210(PF13240)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================