Effective results for Tannerella forsythia 92A2 (eggnog40)

Summary

Number of putative secreted proteins: 112
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 112 proteins (32 high, 80 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
203275.BFO_0222(PF14684) (PF03572)ER
203275.BFO_3297(PF14684) (PF03572)ER
203275.BFO_2298(PF09112) (PF09113)ER
203275.BFO_0742(PF14684) (PF03572)ER
203275.BFO_0492(PF17132)ER
203275.BFO_0491(PF17132)mitochondrial
203275.BFO_0039(PF03092)ER
203275.BFO_1720(PF13905)ER
203275.BFO_2889PF17170ER
203275.BFO_2171(PF13905)ER
203275.BFO_1080(PF03572)ER
203275.BFO_0833(PF02368)ER
203275.BFO_0908(PF13173)(mitochondrial)
203275.BFO_3010(PF03572)ER
203275.BFO_0872PF17170ER
203275.BFO_1890(PF13173)(mitochondrial)
203275.BFO_0040(PF07075)ER
203275.BFO_0046(PF03572)ER
203275.BFO_1319(PF13905)ER
203275.BFO_0073PF17170(ER)
203275.BFO_0078PF17170ER
203275.BFO_0099PF17170ER
203275.BFO_0097(PF03572)ER
203275.BFO_2026PF17170ER
203275.BFO_2023(PF03572)(ER)
203275.BFO_0665(PF03572)ER
203275.BFO_0087(PF03572)ER
203275.BFO_0655(PF17132)mitochondrial
203275.BFO_0340PF17170ER
203275.BFO_0345PF17170ER
203275.BFO_0349PF17170ER
203275.BFO_2000(PF02368)ER
203275.BFO_2860(PF02368)ER
203275.BFO_2861(PF02368)ER
203275.BFO_2862(PF02368)ER
203275.BFO_2864(PF02368)ER
203275.BFO_2865(PF02368)ER
203275.BFO_2912(PF02368)ER
203275.BFO_1910(PF02368)ER
203275.BFO_1918(PF02368)ER
203275.BFO_1773(PF02368)ER
203275.BFO_0574(PF02368)ER
203275.BFO_0575(PF02368)ER
203275.BFO_0371PF17170ER
203275.BFO_1020PF17170(ER)
203275.BFO_3147(PF13905)ER
203275.BFO_0383PF17170ER
203275.BFO_1634(PF02368)ER
203275.BFO_1034(PF13905)ER
203275.BFO_0607(PF03572)ER
203275.BFO_2092(PF07075)(ER)
203275.BFO_0102(PF03412)(plastid)
203275.BFO_1261(PF13155) (PF01807)
203275.BFO_3061(PF13155) (PF01807)
203275.BFO_3127(PF13173)(mitochondrial)
203275.BFO_0871(PF02709)(ER)
203275.BFO_0685(PF13155) (PF01807)
203275.BFO_0257(PF01715)(plastid)
203275.BFO_3098(PF03901)(ER)
203275.BFO_0617(PF13155) (PF01807)
203275.BFO_0770(PF07837) (PF02971)
203275.BFO_2708PF12762not used
203275.BFO_2140(PF07075)
203275.BFO_1055(PF04326)
203275.BFO_0105(PF05147)
203275.BFO_1663PF12873
203275.BFO_1287(PF03412)
203275.BFO_0037PF16269
203275.BFO_2194(PF13173)
203275.BFO_2515PF12762
203275.BFO_3001PF12762
203275.BFO_0113(PF05147)
203275.BFO_0111(PF03412)
203275.BFO_0114(PF02709)
203275.BFO_1241(PF04326)
203275.BFO_1426(PF03412)
203275.BFO_2236PF17170
203275.BFO_0055PF17170
203275.BFO_0271(PF13173)
203275.BFO_1472PF12762
203275.BFO_0862(PF05147)
203275.BFO_0863(PF02709)
203275.BFO_0860(PF03412)
203275.BFO_0048(PF05147)
203275.BFO_1301PF12762
203275.BFO_0096(PF05147)
203275.BFO_0325PF13912
203275.BFO_3264(PF13173)
203275.BFO_0067(PF05147)
203275.BFO_0241PF12762
203275.BFO_0088(PF03412)
203275.BFO_0082(PF03412)
203275.BFO_3303(PF05693)
203275.BFO_1748PF03385
203275.BFO_1217(PF16011)
203275.BFO_1697(PF03412)
203275.BFO_3202(PF04326)
203275.BFO_3206(PF13155)
203275.BFO_3204(PF13173)
203275.BFO_1915(PF07787)
203275.BFO_0355PF12762
203275.BFO_0356PF17170
203275.BFO_0369PF12762
203275.BFO_0363PF17170
203275.BFO_1017PF17170
203275.BFO_3096PF17170
203275.BFO_3095(PF03572)
203275.BFO_1705(PF05147)
203275.BFO_1366(PF01715)
203275.BFO_1141PF12762
203275.BFO_2049PF12762
203275.BFO_0159(PF04326)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================