Effective results for Xanthomonas axonopodis pv. citri str. 306 (eggnog40)

Summary

Number of putative secreted proteins: 661
- Predicted by EffectiveT3: 194 (high confidence), 294 (low confidence)
- Predicted by EffectiveCCBD: 10 within, 10 before, 27 behind expected region 25..70aa
- Predicted by T4SEpre: 75
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 99 proteins (25 high, 74 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
190486.XAC3505(PF14686) (PF09284) (PF14683)ER
190486.XAC3712(PF01431) (PF05649)ER
190486.XAC3223PF13276 (PF00665)(mitochondrial)
190486.XAC2661PF13276 (PF00665)(mitochondrial)
190486.XAC4323PF13276 (PF00665)(mitochondrial)
190486.XAC0342PF13276 (PF00665)(mitochondrial)
190486.XAC2872(PF01431) (PF05649)ER
190486.XAC4208PF13276 (PF00665)(mitochondrial)
190486.XAC2225PF13276 (PF00665)(mitochondrial)
190486.XAC2131PF13276 (PF00665)(mitochondrial)
190486.XAC3320PF13276 (PF00665)(mitochondrial)
190486.XAC3248PF13276 (PF00665)(mitochondrial)
190486.XAC2101PF13276 (PF00665)(mitochondrial)
190486.XAC2747(PF01431) (PF05649)ER
190486.XAC2746(PF01431) (PF05649)ER
190486.XAC2174PF13276 (PF00665)(mitochondrial)
190486.XAC1071PF13276 (PF00665)(mitochondrial)
190486.XAC1103PF13276 (PF00665)(mitochondrial)
190486.XAC1920PF13276 (PF00665)(mitochondrial)
190486.XAC0153PF13276 (PF00665)(mitochondrial)
190486.XAC1661PF13276 (PF00665)(mitochondrial)
190486.XAC1052PF13276 (PF00665)mitochondrial; (mitochondrial)
190486.XAC0091PF13276 (PF00665)(mitochondrial)
190486.XAC3611+(PF04253)(mitochondrial); plastid
190486.XAC2634PF13276 (PF00665)(mitochondrial)
190486.XAC0578PF13276 (PF00665)(mitochondrial)
190486.XAC0591(PF00930)ER
190486.XAC1975+(>)plastid
190486.XAC0626(PF08212)ER
190486.XAC2532(PF00930)(ER)
190486.XAC0756(>)ER
190486.XAC1979(>)ER
190486.XAC3726+(mitochondrial)
190486.XAC2858+(mitochondrial); (plastid)
190486.XAC0037+(mitochondrial); (plastid)
190486.XAC1505(PF00665)mitochondrial
190486.XAC1651+(mitochondrial); mitochondrial
190486.XAC1376(>)mitochondrial
190486.XAC4106(PF00930)ER
190486.XAC0007(PF09295)ER
190486.XAC3204(>)ER
190486.XAC1483+ER
190486.XAC3119(PF10142)ER
190486.XAC2465(>)ER
190486.XAC2467+(ER)
190486.XAC2245+ER
190486.XAC2646++(plastid)
190486.XAC2889(+)(PF00665)(mitochondrial)
190486.XAC3845+mitochondrial; (mitochondrial)
190486.XAC3158(>)ER
190486.XAC3279(>)ER
190486.XAC1694(>)ER; (ER)
190486.XAC0838+ER
190486.XAC2099(+)(PF00665)(mitochondrial)
190486.XAC3314PF03080mitochondrial; plastid
190486.XAC1685(+)+(mitochondrial); plastid
190486.XAC1684+ER
190486.XAC2130(<)mitochondrial
190486.XAC0800(PF11539)mitochondrial
190486.XAC3058+(mitochondrial)
190486.XAC4206+ER
190486.XAC0444(PF07653)mitochondrial
190486.XAC2424(PF00665)mitochondrial
190486.XAC2682+mitochondrial; (mitochondrial)
190486.XAC1240+ER
190486.XAC4028(<)ER
190486.XAC1471+(ER)
190486.XAC3999(+)+ER
190486.XAC4046(PF00930)ER
190486.XAC0449+(mitochondrial)
190486.XAC4342+ER
190486.XAC3353(PF08332)ER
190486.XAC2358+(mitochondrial)
190486.XAC2901+mitochondrial
190486.XAC2341+ER
190486.XAC3531(<)ER
190486.XAC0408++(plastid)
190486.XAC0400+(mitochondrial)
190486.XAC2371PF13276mitochondrial; (mitochondrial)
190486.XAC3284(+)(PF00665)(mitochondrial)
190486.XAC3282(+)+ER
190486.XAC4259(PF08212)ER
190486.XAC2399(>)ER
190486.XAC2962(>)ER
190486.XAC3765(+)(PF00665)(mitochondrial)
190486.XAC2561(PF08212)ER
190486.XAC0899(PF08332)ER
190486.XAC1137+(mitochondrial)
190486.XAC0557(PF00328)ER
190486.XAC0555+(mitochondrial)
190486.XAC3598(>)ER
190486.XAC3943(+)(PF00665)(mitochondrial)
190486.XAC3706+(mitochondrial)
190486.XAC2541(PF00930)ER; mitochondrial
190486.XAC3232+ER
190486.XAC2722(>)mitochondrial
190486.XAC3855+ER
190486.XAC1977+mitochondrial
190486.XAC1974+plastid
190486.XAC2531(+)ER
190486.XAC0754+(PF00646)
190486.XAC1715++
190486.XAC2265+(mitochondrial)
190486.XAC2665(+)(ER)
190486.XAC3821+plastid
190486.XAC3926(+)ER; (mitochondrial)
190486.XAC0582+(plastid)
190486.XAC2539+plastid
190486.XAC4356+(plastid)
190486.XAC2529+(ER)
190486.XAC4308+plastid
190486.XAC3342+(ER)
190486.XAC2184(+)mitochondrial
190486.XAC2673+(plastid)
190486.XAC1509(<)(PF13910)
190486.XAC2075(+)mitochondrial; (mitochondrial)
190486.XAC1190+(mitochondrial)
190486.XAC4031+(plastid)
190486.XAC3113(+)(mitochondrial); plastid
190486.XAC1208+(plastid)
190486.XAC1205+(plastid)
190486.XAC1203(+)mitochondrial; plastid
190486.XAC3904(>)(plastid)
190486.XAC2500+plastid
190486.XAC2928+plastid
190486.XAC2899(+)(mitochondrial)
190486.XAC0925(+)ER
190486.XAC1821+(plastid)
190486.XAC0247+(>)
190486.XAC1556+(plastid)
190486.XAC4006+(plastid)
190486.XAC0073(PF08975)(mitochondrial)
190486.XAC0905+(mitochondrial)
190486.XAC3561(>)(mitochondrial)
190486.XAC3335+plastid
190486.XAC3339(>)(ER)
190486.XAC1798(+)mitochondrial; (ER)
190486.XAC1383+plastid
190486.XAC4172+plastid
190486.XAC0456+(plastid)
190486.XAC3650(<)+
190486.XAC4027+(ER)
190486.XAC2432PF13276 (PF00665)
190486.XAC3503(PF01527)(plastid)
190486.XAC2745(PF01431) (PF05649)
190486.XAC1006+(mitochondrial)
190486.XAC1002(+)(mitochondrial)
190486.XAC0194(+)ER
190486.XAC0967+(mitochondrial)
190486.XAC2949+(plastid)
190486.XAC1462+plastid
190486.XAC1072+PF14700
190486.XAC0184+(plastid)
190486.XAC0506+(plastid)
190486.XAC0721+(mitochondrial)
190486.XAC3187(>)(mitochondrial)
190486.XAC1679(+)(mitochondrial); (ER)
190486.XAC2348+(PF04768)
190486.XAC3294(+)(mitochondrial)
190486.XAC3569(+)(mitochondrial); (plastid)
190486.XAC1294+(ER)
190486.XAC4279(+)(mitochondrial)
190486.XAC1114(+)(ER); (plastid)
190486.XAC3617+plastid
190486.XAC3196(+)(mitochondrial); plastid
190486.XAC4199+(mitochondrial)
190486.XAC2578+(plastid)
190486.XAC3376(+)ER
190486.XAC2029(+)(PF06884)(plastid)
190486.XAC2024+plastid
190486.XAC1287(+)mitochondrial
190486.XAC2151+(plastid)
190486.XAC2203+plastid
190486.XAC0232+(plastid)
190486.XAC2969(+)ER
190486.XAC0418+(mitochondrial)
190486.XAC3386+(mitochondrial)
190486.XAC4092(+)(mitochondrial); mitochondrial
190486.XAC4079(+)mitochondrial
190486.XAC0679(+)(mitochondrial)
190486.XAC2145(+)(mitochondrial)
190486.XAC0543++
190486.XAC0761+(plastid)
190486.XAC3230(+)(PF01129)(plastid)
190486.XAC0286+plastid
190486.XAC0599+
190486.XAC4233+
190486.XAC0112+
190486.XAC4299+
190486.XAC3221(PF01527)
190486.XAC2285+
190486.XAC2441+
190486.XAC2994+
190486.XAC2263+
190486.XAC2662(PF01527)
190486.XAC3393+
190486.XAC1367+
190486.XAC1369+
190486.XAC3827+
190486.XAC3824+
190486.XAC1189+
190486.XAC1984+
190486.XAC1981+
190486.XAC1989+
190486.XAC0638(+)+
190486.XAC2526+
190486.XAC0031+
190486.XAC3108(+)(mitochondrial)
190486.XAC3224+
190486.XAC1504(PF01527)
190486.XAC1214+
190486.XAC1211+
190486.XAC1170+
190486.XAC1178+
190486.XAC0413+
190486.XAC2447+
190486.XAC3934+
190486.XAC3936(PF00665)
190486.XAC1391+
190486.XAC3979+
190486.XAC4100+
190486.XAC2867+
190486.XAC3590+
190486.XAC3020+
190486.XAC0004+
190486.XAC0478(<)
190486.XAC3447+
190486.XAC4322(PF01527)
190486.XAC1481+
190486.XAC3017+
190486.XAC2885+
190486.XAC2880+
190486.XAC2213(+)(>)
190486.XAC2577+
190486.XAC1340+
190486.XAC3674+
190486.XAC3420+
190486.XAC0346+
190486.XAC0345+
190486.XAC0343(PF01527)
190486.XAC0650(+)(plastid)
190486.XAC2502+
190486.XAC2475+
190486.XAC2890(PF01527)
190486.XAC4070+
190486.XAC2238+
190486.XAC3323+
190486.XAC1359+
190486.XAC1825+
190486.XAC4124+
190486.XAC0483+
190486.XAC0466+
190486.XAC0464+
190486.XAC4132(PF00328)
190486.XAC4133(PF01419)
190486.XAC4207(PF01527)
190486.XAC1753+
190486.XAC0668(+)(plastid)
190486.XAC4302+
190486.XAC3461+
190486.XAC2224(PF01527)
190486.XAC1681+
190486.XAC2316+
190486.XAC2132(PF01527)
190486.XAC1320+
190486.XAC1032(<)
190486.XAC0012(+)(mitochondrial)
190486.XAC4159+
190486.XAC0152(PF01527)
190486.XAC0257+
190486.XAC0253+
190486.XAC0258(>)
190486.XAC3079(+)(plastid)
190486.XAC2781+
190486.XAC2786+
190486.XAC0674+
190486.XAC2237+
190486.XAC3321(PF01527)
190486.XAC0929(+)(plastid)
190486.XAC3325+
190486.XAC0812(PF00328)
190486.XAC1783+
190486.XAC0190+
190486.XAC3579+
190486.XAC3474+
190486.XAC0363(+)(ER)
190486.XAC0907+
190486.XAC1804+
190486.XAC0260+
190486.XAC3797+
190486.XAC3086+
190486.XAC2426(PF01527)
190486.XAC3404+
190486.XAC2688(<)
190486.XAC3247(PF01527)
190486.XAC1795+
190486.XAC1791+
190486.XAC1385+
190486.XAC0601+
190486.XAC1305(PF16158)
190486.XAC1301+
190486.XAC0303+
190486.XAC1872+
190486.XAC1870+
190486.XAC1877+
190486.XAC0277(+)(ER)
190486.XAC3036(+)(plastid)
190486.XAC2926+
190486.XAC2922+
190486.XAC2929+
190486.XAC4194(+)(plastid)
190486.XAC2699+
190486.XAC2102(PF01527)
190486.XAC2100(PF01527)
190486.XAC2219+
190486.XAC2212+
190486.XAC1865+
190486.XAC0207+
190486.XAC0205(>)
190486.XAC2437+
190486.XAC1910+
190486.XAC1983+
190486.XAC0518+
190486.XAC4188(>)
190486.XAC2469+
190486.XAC1643+
190486.XAC2175(PF01527)
190486.XAC2375+
190486.XAC2770+
190486.XAC2777+
190486.XAC4320+
190486.XAC1262(+)(PF07720)
190486.XAC0163(+)(ER)
190486.XAC2005+
190486.XAC1070(PF01527)
190486.XAC1635(+)(mitochondrial)
190486.XAC1102(PF01527)
190486.XAC3738+
190486.XAC2614+
190486.XAC1921(PF01527)
190486.XAC0198+
190486.XAC2904+
190486.XAC3744(+)(ER)
190486.XAC3745(+)+
190486.XAC3748+
190486.XAC1671+
190486.XAC2343+
190486.XAC1451(+)(ER)
190486.XAC3536(+)plastid
190486.XAC1705+
190486.XAC3623+
190486.XAC3532+
190486.XAC1933+
190486.XAC0716+
190486.XAC1669+
190486.XAC1660(PF01527)
190486.XAC1987(>)
190486.XAC2372(PF01527)
190486.XAC3283(PF01527)
190486.XAC4256+
190486.XAC3377+
190486.XAC0463(+)plastid
190486.XAC1283+
190486.XAC1446+
190486.XAC1445+
190486.XAC2154+
190486.XAC1053(PF01527)
190486.XAC1058+
190486.XAC3040+
190486.XAC3523(+)+
190486.XAC3262+
190486.XAC0793+
190486.XAC0416+
190486.XAC0142+
190486.XAC1949+
190486.XAC1618(>)
190486.XAC4081+
190486.XAC0090(PF01527)
190486.XAC2967(+)(plastid)
190486.XAC3760(+)plastid
190486.XAC3764(PF01527)
190486.XAC3148+
190486.XAC3455+
190486.XAC1613(PF00161)
190486.XAC3146+
190486.XAC4264+
190486.XAC4060+
190486.XAC2633(PF01527)
190486.XAC1544+
190486.XAC1307(+)+
190486.XAC1040+
190486.XAC0683(+)(plastid)
190486.XAC3316+
190486.XAC2373(+)+
190486.XAC1195(<)
190486.XAC1135(>)
190486.XAC0089(+)(<)
190486.XAC3814+
190486.XAC2959+
190486.XAC2701(>)
190486.XAC3777+not used
190486.XAC0174+
190486.XAC3559+
190486.XAC2827PF17067
190486.XAC4270+
190486.XAC4075+
190486.XAC4072+
190486.XAC2736+
190486.XAC2038+
190486.XAC0959+
190486.XAC1422(+)(plastid)
190486.XAC2601+
190486.XAC2603(PF01527)
190486.XAC1147(PF16387)
190486.XAC2236+
190486.XAC0549+
190486.XAC3944(PF01527)
190486.XAC0167(+)+
190486.XAC1969(+)(mitochondrial)
190486.XAC3016+
190486.XAC3014+
190486.XAC3015+
190486.XAC3011+
190486.XAC0618+
190486.XAC0942+
190486.XAC2613+
190486.XAC2619+
190486.XAC3637(>)
190486.XAC1564+
190486.XAC3564+
190486.XAC3836(+)(plastid)
190486.XAC3956(PF08212)
190486.XAC0579(PF01527)
190486.XAC0595(+)
190486.XAC1973(+)
190486.XAC1976(+)
190486.XAC2846(+)
190486.XAC4297(+)
190486.XAC2533(+)
190486.XAC2530(+)
190486.XAC3005(+)
190486.XAC2281(+)
190486.XAC2445(+)
190486.XAC1406(+)
190486.XAC1138(+)
190486.XAC1574(+)
190486.XAC1570(+)
190486.XAC2062(+)
190486.XAC0603(+)
190486.XAC0295(+)
190486.XAC3924(+)
190486.XAC0564(+)
190486.XAC1186(+)
190486.XAC1187(+)
190486.XAC2434(+)
190486.XAC0637(+)
190486.XAC4333(+)
190486.XAC2186(+)
190486.XAC2180(+)
190486.XAC2679(+)
190486.XAC1650(+)
190486.XAC1219(+)
190486.XAC1171(+)
190486.XAC1176(+)
190486.XAC1372(+)
190486.XAC2468(+)
190486.XAC3939(+)not used
190486.XAC0354(+)
190486.XAC0879(+)
190486.XAC3734(+)
190486.XAC0134(+)
190486.XAC0131(+)
190486.XAC0642(+)
190486.XAC3025(+)
190486.XAC2243(+)
190486.XAC3551(+)
190486.XAC2887(+)
190486.XAC0827(+)
190486.XAC2089(+)
190486.XAC2211(+)
190486.XAC3909(+)
190486.XAC0341(+)
190486.XAC1838(+)
190486.XAC0127(+)
190486.XAC2875(+)
190486.XAC2879(+)
190486.XAC3052(+)
190486.XAC0017(+)
190486.XAC0015(+)
190486.XAC4316(+)
190486.XAC2650(+)
190486.XAC0927(+)
190486.XAC3969(+)
190486.XAC3910(+)
190486.XAC3917(+)
190486.XAC0331(+)
190486.XAC0336(+)
190486.XAC1820(+)
190486.XAC4125(+)
190486.XAC4122(+)
190486.XAC4121(+)
190486.XAC0246(+)
190486.XAC0249(+)
190486.XAC0469(+)
190486.XAC3685(+)
190486.XAC2790(+)
190486.XAC2400(+)
190486.XAC1590(+)
190486.XAC0419(+)
190486.XAC1322(+)
190486.XAC1326(+)
190486.XAC3570(+)
190486.XAC4346(+)
190486.XAC3754(+)
190486.XAC0323(+)
190486.XAC1550(+)
190486.XAC3452(+)
190486.XAC1813(+)
190486.XAC4151(+)
190486.XAC4154(+)
190486.XAC0499(+)
190486.XAC3783(+)not used
190486.XAC0471(+)
190486.XAC0785(+)
190486.XAC0076(+)
190486.XAC2785(+)
190486.XAC0600(+)
190486.XAC2731(+)
190486.XAC2306(+)
190486.XAC3259(+)
190486.XAC0813(+)
190486.XAC2377(+)
190486.XAC1781(+)
190486.XAC1331(+)
190486.XAC4315(+)
190486.XAC0903(+)
190486.XAC1801(+)
190486.XAC1919(+)
190486.XAC0042(+)
190486.XAC3087(+)
190486.XAC4115(+)
190486.XAC2335(+)
190486.XAC3884(+)
190486.XAC3888(+)
190486.XAC1019(+)
190486.XAC2839(+)
190486.XAC1879(+)
190486.XAC4171(+)
190486.XAC2919(+)
190486.XAC3439(+)
190486.XAC0692(+)
190486.XAC1498(+)
190486.XAC1657(+)
190486.XAC2698(+)
190486.XAC4220(+)
190486.XAC3507(+)
190486.XAC0874(+)
190486.XAC3291(+)
190486.XAC1273(+)
190486.XAC2366(+)
190486.XAC2290(+)
190486.XAC3519(+)
190486.XAC1000(+)
190486.XAC3970(+)
190486.XAC4166(+)
190486.XAC4213(+)
190486.XAC0519(+)
190486.XAC0731(+)
190486.XAC3792(+)
190486.XAC4186(+)
190486.XAC1645(+)
190486.XAC1640(+)
190486.XAC1649(+)
190486.XAC2594(+)
190486.XAC0846(+)
190486.XAC2779(+)
190486.XAC2006(+)
190486.XAC1260(+)
190486.XAC1460(+)
190486.XAC3506(+)not used
190486.XAC0189(+)
190486.XAC3981(+)
190486.XAC0728(+)
190486.XAC3180(+)
190486.XAC0968(+)
190486.XAC3403(+)
190486.XAC2165(+)
190486.XAC0854(+)
190486.XAC1584(+)
190486.XAC2764(+)
190486.XAC0766(+)
190486.XAC2580(+)
190486.XAC1110(+)
190486.XAC3628(+)
190486.XAC3996(+)
190486.XAC3994(+)
190486.XAC4211(+)
190486.XAC0150(+)
190486.XAC2481(+)
190486.XAC2391(+)
190486.XAC2715(+)
190486.XAC2022(+)
190486.XAC3526(+)
190486.XAC2153(+)
190486.XAC4240(+)
190486.XAC0062(+)
190486.XAC3616(+)
190486.XAC3965(+)
190486.XAC1616(+)
190486.XAC4263(+)
190486.XAC2567(+)
190486.XAC4065(+)
190486.XAC0912(+)
190486.XAC2381(+)
190486.XAC2036(+)
190486.XAC0913(+)
190486.XAC0891(+)
190486.XAC3468(+)
190486.XAC1047(+)
190486.XAC1044(+)
190486.XAC1408(+)
190486.XAC1136(+)
190486.XAC3816(+)
190486.XAC0397(+)
190486.XAC2958(+)
190486.XAC2537(+)
190486.XAC2709(+)
190486.XAC2557(+)
190486.XAC4074(+)
190486.XAC1731(+)
190486.XAC2042(+)
190486.XAC2047(+)
190486.XAC0803(+)
190486.XAC1149(+)
190486.XAC2638(+)
190486.XAC2637(+)
190486.XAC3945(+)
190486.XAC1892(+)
190486.XAC3493(+)
190486.XAC0161(+)
190486.XAC1966(+)
190486.XAC2544(+)
190486.XAC2542(+)
190486.XAC3235(+)
190486.XAC1418(+)
190486.XAC1410(+)
190486.XAC1569(+)
190486.XAC4252(+)
190486.XAC3378(+)
190486.XAC3445(+)
190486.XAC1153(+)
190486.XAC1155(+)
190486.XAC1397(+)
190486.XAC0610(+)
190486.XAC0744(+)
190486.XAC3839(+)
190486.XAC2496(+)
190486.XAC0855(+)
190486.XAC0280(+)
190486.XAC0576(+)
190486.XAC1886(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.625 (13/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================