Effective results for Alteromonadales bacterium TW-7 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 37 proteins (2 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
156578.ATW7_12281(PF04127)mitochondrial
156578.ATW7_02797(PF16187)ER
156578.ATW7_02562(PF00883)(mitochondrial); (plastid)
156578.ATW7_12883(PF00930)ER
156578.ATW7_00685(PF00930)ER
156578.ATW7_00990(PF00930)(ER); ER
156578.ATW7_16383PF00036ER
156578.ATW7_15974(PF00245)ER
156578.ATW7_15979(PF00245)ER
156578.ATW7_05936(PF08547)ER
156578.ATW7_00330(PF00245)ER
156578.ATW7_12698(PF00883)(ER)
156578.ATW7_11095(PF00930)ER
156578.ATW7_08731(PF09317)ER
156578.ATW7_02257(PF00930)ER
156578.ATW7_08866(PF09317)ER
156578.ATW7_16393PF00036ER
156578.ATW7_11105(PF00883)(ER)
156578.ATW7_02307(PF08547)(mitochondrial)
156578.ATW7_13038(PF08695)(mitochondrial)
156578.ATW7_07037(PF02224)(ER); not used
156578.ATW7_12288(PF04127)not used
156578.ATW7_04067(PF00883)
156578.ATW7_10283(PF07700)
156578.ATW7_00325(PF00245)
156578.ATW7_12448(PF02224)not used
156578.ATW7_07659(PF06315)
156578.ATW7_02937(PF09317)
156578.ATW7_05641(PF16187)
156578.ATW7_10173(PF10013)not used
156578.ATW7_03872(PF12576)
156578.ATW7_04237(PF07700)
156578.ATW7_02397(PF10354)
156578.ATW7_08269(PF06315)
156578.ATW7_13448(PF02460)
156578.ATW7_01500(PF13875)
156578.ATW7_11370(PF00883)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================